A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
☆41Jul 5, 2022Updated 3 years ago
Alternatives and similar repositories for Clipper
Users that are interested in Clipper are comparing it to the libraries listed below
Sorting:
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated 10 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated 2 weeks ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 4 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆23Sep 12, 2025Updated 5 months ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- sort genomic data☆36Nov 7, 2025Updated 3 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 3 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 2 years ago
- ☆10Oct 6, 2020Updated 5 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- ☆46Nov 21, 2025Updated 3 months ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 3 weeks ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Jan 14, 2025Updated last year
- ☆13Feb 18, 2026Updated last week
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 6 years ago
- ☆13Dec 23, 2025Updated 2 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago