Alternatives and similar repositories for S3V2_IDEAS_ESMP

Users that are interested in S3V2_IDEAS_ESMP are comparing it to the libraries listed below

• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 4 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 4 months ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated last year
• BIMSBbioinfo / HOT-or-not-examining-the-basis-of-high-occupancy-target-regions
  HOT regions paper
  ☆11Updated 6 years ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 7 months ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆14Updated last week
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 6 years ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆9Updated 4 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• kircherlab / cfDNA
  cfDNA analysis workflow
  ☆21Updated 2 years ago
• genemine / iread
  iread
  ☆25Updated 3 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 9 months ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• cziegenhain / UMIcountR
  ☆16Updated 3 years ago
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆17Updated 6 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• ELELAB / MoonlightR
  ☆17Updated last year
• jacobhepkema / scover
  scover
  ☆23Updated last year
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• CompEpigen / ezASCAT
  Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
  ☆11Updated 3 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago