Alternatives and similar repositories for spatialdata-plot:

Users that are interested in spatialdata-plot are comparing it to the libraries listed below

• scverse / spatialdata-io
  ☆47Updated this week
• scverse / spatialdata-notebooks
  ☆39Updated this week
• HelenaLC / SpatialData
  ☆17Updated 3 weeks ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆47Updated this week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆15Updated this week
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆36Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆24Updated 3 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 4 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆25Updated 4 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆54Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆17Updated 6 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 2 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 7 months ago
• HiDiHlabs / ssam
  ☆27Updated 3 months ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆19Updated this week
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆34Updated 2 weeks ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆73Updated 3 weeks ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆43Updated last week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 9 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated this week
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆23Updated last week
• saeyslab / harpy
  https://harpy.readthedocs.io/en/latest/
  ☆12Updated this week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆83Updated this week
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆29Updated this week
• damienArnol / svca
  ☆13Updated 6 years ago
• prabhakarlab / Banksy_py
  ☆36Updated last month
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆33Updated 2 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆15Updated 3 weeks ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated 4 months ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated this week