scverse / spatialdata-plotLinks
Static plotting for spatialdata
☆67Updated this week
Alternatives and similar repositories for spatialdata-plot
Users that are interested in spatialdata-plot are comparing it to the libraries listed below
Sorting:
- ☆72Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week
- ☆59Updated this week
- Python API and Jupyter widget for Vitessce☆56Updated last week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- ☆18Updated 4 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆76Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 5 months ago
- Interactive visualization of spatial omics data☆67Updated last week
- ☆27Updated 11 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆85Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆35Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Slides and Notebooks for scverse 2024☆17Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 3 months ago
- Efficient data structures and IO for whole slide image analysis☆15Updated last week
- Segmentation error aware clustering for multiplexed imaging☆18Updated 8 months ago
- Automatically annotate cell types, consistently across samples.☆16Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- ☆28Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆129Updated this week
- ☆13Updated last week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆27Updated this week