scverse / spatialdata-plot
Static plotting for spatialdata
☆47Updated this week
Alternatives and similar repositories for spatialdata-plot:
Users that are interested in spatialdata-plot are comparing it to the libraries listed below
- ☆50Updated last week
- ☆45Updated this week
- ☆17Updated 2 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆23Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated this week
- ☆25Updated 5 months ago
- Interactive visualization of spatial omics data☆51Updated this week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆64Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆26Updated 5 months ago
- ☆27Updated 5 months ago
- Slides and Notebooks for scverse 2024☆17Updated 5 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated 3 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- Interoperability between SpatialData and the Xenium Explorer☆19Updated 7 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆76Updated 2 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated last month
- Multiview Intercellular SpaTial modeling framework☆50Updated 11 months ago
- Create PyTorch Datasets from AnnData☆20Updated last week
- ☆41Updated 3 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆34Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆20Updated this week
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 6 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆55Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated last week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆47Updated last month
- Segmentation error aware clustering for multiplexed imaging☆15Updated 2 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆24Updated last week
- Python API and Jupyter widget for Vitessce☆44Updated last month