Static plotting for spatialdata
☆82Jul 10, 2026Updated last week
Alternatives and similar repositories for spatialdata-plot
Users that are interested in spatialdata-plot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive visualization of spatial omics data☆87Jul 2, 2026Updated 2 weeks ago
- ☆100Jul 2, 2026Updated 2 weeks ago
- ☆67Jul 2, 2026Updated 2 weeks ago
- An open and interoperable data framework for spatial omics data☆382Updated this week
- ☆18May 15, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- Single-cell spatial omics analysis that makes you happy!☆70Jul 13, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆45Jun 11, 2026Updated last month
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆288Updated this week
- Build contrasts for models defined with formulaic☆13Jul 13, 2026Updated last week
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 4 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- ☆37Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 2 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆181Jul 13, 2026Updated last week
- Spatial Single Cell Analysis in Python☆584Jul 13, 2026Updated last week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆386Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆77Jun 22, 2026Updated 3 weeks ago
- Fast array utilities☆15Updated this week
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- BANKSY: spatial clustering☆157May 30, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Jul 13, 2026Updated last week
- Morphological features from images and masks made easy.☆48Jul 7, 2026Updated last week
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 2 months ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- ☆31Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jul 13, 2026Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16Apr 7, 2026Updated 3 months ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆180Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- Registry for scverse ecosystem packages☆37Updated this week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated 2 months ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 6 months ago