Alternatives and similar repositories for spatialdata-plot

Users that are interested in spatialdata-plot are comparing it to the libraries listed below

• scverse / spatialdata-io
  ☆85Updated last week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆48Updated last week
• scverse / spatialdata-notebooks
  ☆62Updated last week
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆73Updated last week
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆22Updated 8 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆33Updated last week
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆60Updated last month
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆105Updated last week
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆81Updated 2 weeks ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆39Updated last week
• HelenaLC / SpatialData
  ☆19Updated 3 weeks ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆84Updated last month
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆46Updated 6 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆47Updated last month
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆35Updated last year
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆17Updated last week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last month
• giovp / spatialdata-sandbox
  ☆13Updated last month
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 6 months ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆104Updated this week
• HiDiHlabs / ssam
  ☆27Updated last year
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆33Updated 5 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 5 months ago
• theislab / troutpy
  Package for the analysis of Transcripts outside segmented cells in ST data
  ☆23Updated this week
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated 11 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆144Updated this week
• rendeirolab / wsidata
  Efficient data structures and IO for whole slide image analysis
  ☆17Updated 3 weeks ago