ClusterMap for multi-scale clustering analysis of spatial gene expression
☆46Jun 13, 2025Updated 10 months ago
Alternatives and similar repositories for ClusterMap
Users that are interested in ClusterMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Segmentation of Spatial Transcriptomics Data☆204Apr 23, 2026Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆107Apr 20, 2026Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 5 months ago
- ☆19Mar 31, 2024Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆23Mar 26, 2021Updated 5 years ago
- ☆72May 28, 2025Updated 11 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 7 months ago
- ☆13Jul 1, 2021Updated 4 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Nov 6, 2025Updated 5 months ago
- Analyzing cellular niches in spatial transcriptomics data☆35Nov 18, 2024Updated last year
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Interactive visualization of spatial omics data☆85Updated this week
- Spatial Single-Cell Analysis Toolkit☆111Mar 11, 2026Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆41Apr 12, 2026Updated 2 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆52Feb 4, 2025Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆167Updated this week
- Toolbox for the analysis of smFISH images.☆76Oct 31, 2023Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 4 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆13Jan 27, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆18Sep 19, 2025Updated 7 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last month
- Sub-cellular spatial transcriptomics Cell Segmentation☆70Oct 1, 2023Updated 2 years ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆93Jun 7, 2022Updated 3 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- ☆28Nov 21, 2019Updated 6 years ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆71Jan 18, 2023Updated 3 years ago
- Swift Phenotypic Analysis of Cells☆10Jun 8, 2025Updated 10 months ago
- ☆45Feb 13, 2026Updated 2 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- multimodal whole slide image registration in a graph structure☆101Jul 4, 2024Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆275Updated this week
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆18Apr 21, 2026Updated last week