wanglab-broad / ClusterMapLinks
ClusterMap for multi-scale clustering analysis of spatial gene expression
☆46Updated 7 months ago
Alternatives and similar repositories for ClusterMap
Users that are interested in ClusterMap are comparing it to the libraries listed below
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated last month
- Spatial Single-Cell Analysis Toolkit☆106Updated last week
- ☆64Updated last week
- ☆86Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- ☆29Updated last year
- ☆40Updated this week
- Interactive visualization of spatial omics data☆73Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆49Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆82Updated last month
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆107Updated last week
- Integrated pipeline for multiplexed image analysis☆101Updated last week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 2 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- ☆27Updated last year
- Static plotting for spatialdata☆73Updated 2 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated 3 weeks ago
- ☆42Updated 2 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 10 months ago
- ☆53Updated 4 years ago
- Spatial analysis of FISH data☆34Updated 7 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 6 months ago