wanglab-broad / ClusterMap
ClusterMap for multi-scale clustering analysis of spatial gene expression
β45Updated 9 months ago
Alternatives and similar repositories for ClusterMap:
Users that are interested in ClusterMap are comparing it to the libraries listed below
- A Python toolkit for subcellular analysis of spatial transcriptomics dataβ77Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β52Updated 11 months ago
- Spatial Single-Cell Analysis Toolkitβ90Updated 2 weeks ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics dataβ42Updated 9 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.β27Updated 7 months ago
- β50Updated 4 years ago
- β47Updated 4 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information β¦β35Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mappingβ77Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.β23Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.β37Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many otheβ¦β40Updated last week
- β28Updated 6 months ago
- β14Updated 3 years ago
- β29Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentationβ64Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.β36Updated 5 months ago
- β35Updated last year
- data for spacejam2β17Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2β34Updated 2 months ago
- β60Updated 2 weeks ago
- β53Updated last week
- Single-cell spatial proteomics analysis that makes you happy!β27Updated last week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.β40Updated 3 years ago
- Spatial direct messaging detected by bivariate Moranβ26Updated last week
- β48Updated last month
- Interoperability between SpatialData and the Xenium Explorerβ21Updated 9 months ago
- Spatial analysis of FISH dataβ30Updated 11 months ago
- Image Mass Cytometry analysis pipelineβ25Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.β54Updated last month