Alternatives and similar repositories for ClusterMap

Users that are interested in ClusterMap are comparing it to the libraries listed below

• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated last month
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆33Updated 11 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆98Updated 2 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆88Updated last year
• scverse / spatialdata-io
  ☆68Updated this week
• scverse / spatialdata-notebooks
  ☆57Updated this week
• ElementoLab / utag
  ☆39Updated last year
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆24Updated this week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆43Updated last week
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆96Updated 5 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• HiDiHlabs / ssam
  ☆27Updated 11 months ago
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆75Updated this week
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆63Updated last month
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆45Updated last year
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆37Updated last year
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆38Updated 6 months ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆38Updated last week
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆55Updated 2 months ago
• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• fish-quant / ComSeg
  comseg
  ☆23Updated 7 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆66Updated this week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• wollmanlab / JSTA
  ☆15Updated 3 years ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆53Updated last week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆31Updated 2 weeks ago
• prabhakarlab / Banksy_py
  ☆61Updated last month
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated last week
• seqscope / ficture
  ☆37Updated last month