wanglab-broad / ClusterMapLinks
ClusterMap for multi-scale clustering analysis of spatial gene expression
☆45Updated last month
Alternatives and similar repositories for ClusterMap
Users that are interested in ClusterMap are comparing it to the libraries listed below
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- Spatial Single-Cell Analysis Toolkit☆92Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆81Updated last year
- ☆54Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated 3 weeks ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- ☆63Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- ☆56Updated 7 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆72Updated last month
- ☆27Updated 9 months ago
- ☆29Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆51Updated last week
- ☆14Updated 3 years ago
- Integrated pipeline for multiplexed image analysis☆91Updated 3 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 11 months ago
- comseg☆23Updated 5 months ago
- ☆36Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 11 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆28Updated last month
- ☆53Updated last year
- ☆52Updated 4 years ago
- ☆35Updated last month
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆205Updated this week
- Interactive visualization of spatial omics data☆61Updated this week
- data for spacejam2☆17Updated 2 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 3 months ago