wanglab-broad / ClusterMapLinks
ClusterMap for multi-scale clustering analysis of spatial gene expression
☆46Updated 6 months ago
Alternatives and similar repositories for ClusterMap
Users that are interested in ClusterMap are comparing it to the libraries listed below
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated last month
- Spatial Single-Cell Analysis Toolkit☆105Updated last week
- ☆62Updated last week
- ☆85Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated this week
- ☆40Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated last month
- Interactive visualization of spatial omics data☆73Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- ☆29Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆81Updated 2 weeks ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆88Updated 2 weeks ago
- ☆27Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- ☆15Updated 3 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- A toolkit for processing multiplexed tissue images☆67Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- Spatial analysis of FISH data☆34Updated 7 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Integrated pipeline for multiplexed image analysis☆100Updated last week
- ☆53Updated 4 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆71Updated last month