bioFAM / FISHFactorLinks
A probabilistic factor model for spatial transcriptomics data with subcellular resolution
☆23Updated 2 years ago
Alternatives and similar repositories for FISHFactor
Users that are interested in FISHFactor are comparing it to the libraries listed below
Sorting:
- CAST package☆40Updated 8 months ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Test genes for Spatial Variation☆14Updated 6 months ago
- FISH Iterative Cell Typing☆11Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year
- ☆45Updated 2 years ago
- ☆27Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- ☆48Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 months ago
- ☆26Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆29Updated 4 months ago
- ☆26Updated 9 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆18Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆57Updated 2 weeks ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- ☆16Updated 2 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 6 months ago
- Work with trained factor models in Python☆33Updated 8 months ago