A probabilistic factor model for spatial transcriptomics data with subcellular resolution
☆26May 3, 2023Updated 3 years ago
Alternatives and similar repositories for FISHFactor
Users that are interested in FISHFactor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 11 months ago
- Feature extraction and linking of multiplexing data.☆13Oct 13, 2026Updated 2 weeks ago
- ☆47Jun 1, 2026Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- ☆17Sep 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆16Nov 7, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- Intracellular Transcriptomic Analysis Toolkit (InSTAnT)☆13Feb 28, 2025Updated last year
- ☆24Mar 29, 2023Updated 3 years ago
- Static plotting for spatialdata☆89Oct 19, 2026Updated last week
- ☆16Mar 24, 2026Updated 7 months ago
- Evaluating spatially variable gene detection methods for spatial transcriptomics data☆11Jun 8, 2026Updated 4 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Manage biological ontologies.☆27Oct 7, 2026Updated 3 weeks ago
- ☆67Sep 9, 2026Updated last month
- ☆42Oct 18, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated last month
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- ☆28Oct 12, 2024Updated 2 years ago
- A performant scientific image visualization system.☆36Aug 5, 2026Updated 2 months ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Spatial Single-Cell Analysis Toolkit☆116Updated this week
- tension inference for epithelial cells☆20Nov 6, 2023Updated 2 years ago
- AnnData for the browser☆14Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆84Updated this week
- AnnNet (Annotated Network) is a unified, high-expressivity graph platform designed to bring the convenience of AnnData-style annotated co…☆25Oct 11, 2026Updated 2 weeks ago
- scNMT-seq gastrulation☆44Feb 8, 2023Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated 3 weeks ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Neighborhood Non-Negative Matrix Factorization☆11Sep 24, 2026Updated last month
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆34Jul 13, 2023Updated 3 years ago
- ☆20Sep 17, 2026Updated last month
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆116Oct 16, 2026Updated last week
- ☆15Feb 28, 2022Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago