bioFAM / FISHFactorLinks
A probabilistic factor model for spatial transcriptomics data with subcellular resolution
β23Updated 2 years ago
Alternatives and similar repositories for FISHFactor
Users that are interested in FISHFactor are comparing it to the libraries listed below
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β55Updated 2 months ago
- FISH Iterative Cell Typingβ11Updated last year
- β28Updated 11 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ22Updated 2 years ago
- CAST packageβ40Updated 10 months ago
- β45Updated last month
- Test genes for Spatial Variationβ14Updated 8 months ago
- β26Updated 5 years ago
- Nonnegative spatial factorization for multivariate count dataβ59Updated 2 years ago
- spatial transcriptome, single cellβ69Updated 2 years ago
- Quantifying experimental perturbations at single cell resolutionβ109Updated 11 months ago
- β57Updated this week
- Alignment of spatial genomics data using deep Gaussian processesβ28Updated 2 years ago
- Tutorials for Squidpyβ34Updated this week
- Single-cell multi-omics integration using Optimal Transportβ46Updated last month
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cellsβ¦β27Updated 3 years ago
- Spatial direct messaging detected by bivariate Moranβ28Updated 2 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β40Updated 3 years ago
- Regulatory networks with Direct Information in pythonβ40Updated 2 years ago
- Spatial reconstruction of dissociated single-cell dataβ19Updated last year
- β69Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2β38Updated 6 months ago
- β22Updated 3 years ago
- β24Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many otheβ¦β53Updated 2 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systemsβ38Updated 2 months ago
- MultiMAP for integration of single cell multi-omicsβ56Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Setsβ21Updated 4 years ago
- β50Updated 3 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.β16Updated 9 months ago