bioFAM / FISHFactorLinks
A probabilistic factor model for spatial transcriptomics data with subcellular resolution
β25Updated 2 years ago
Alternatives and similar repositories for FISHFactor
Users that are interested in FISHFactor are comparing it to the libraries listed below
Sorting:
- Test genes for Spatial Variationβ15Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Updated 7 months ago
- β30Updated last year
- CAST packageβ42Updated last year
- β47Updated 6 months ago
- spatial transcriptome, single cellβ73Updated 2 years ago
- FISH Iterative Cell Typingβ11Updated last year
- Alignment of spatial genomics data using deep Gaussian processesβ31Updated 3 years ago
- β27Updated 6 years ago
- Regulatory networks with Direct Information in pythonβ40Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ22Updated 3 weeks ago
- Code for Universal Single-Cell Matching with Unpaired Feature Setsβ22Updated 4 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.β65Updated this week
- β28Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transportβ50Updated 5 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seqβ22Updated 3 years ago
- β65Updated last week
- Quasilinear data representations for single-cell omics data analysisβ43Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genβ¦β40Updated 3 years ago
- Nonnegative spatial factorization for multivariate count dataβ62Updated 2 years ago
- Quantifying experimental perturbations at single cell resolutionβ112Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics dataβ77Updated 2 weeks ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.β28Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cellsβ¦β28Updated 4 years ago
- Spatial reconstruction of dissociated single-cell dataβ19Updated 2 years ago
- Dynamical systems methods for RNA velocity analysisβ24Updated 4 years ago
- β22Updated last month
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.β17Updated last year
- MultiMAP for integration of single cell multi-omicsβ55Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorerβ25Updated last year