A probabilistic factor model for spatial transcriptomics data with subcellular resolution
☆25May 3, 2023Updated 3 years ago
Alternatives and similar repositories for FISHFactor
Users that are interested in FISHFactor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Apr 3, 2023Updated 3 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Jul 13, 2023Updated 3 years ago
- Single-cell spatial elucidation through image-augmented graph transformer☆32Jul 7, 2023Updated 3 years ago
- ☆23Dec 8, 2023Updated 2 years ago
- ☆47Jun 1, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Interactive visualization of spatial omics data☆87Jul 2, 2026Updated 2 weeks ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- ☆67Jul 2, 2026Updated 2 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- tension inference for epithelial cells☆20Nov 6, 2023Updated 2 years ago
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- singleCellNet in Python☆18Feb 25, 2026Updated 4 months ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated last year
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 2 months ago
- ☆10Jun 13, 2018Updated 8 years ago
- ☆37Updated this week
- Functional matrix factorization via Bayesian tensor filtering☆13Oct 1, 2025Updated 9 months ago
- The software of Pamona, a partial manifold alignment algorithm.☆23Mar 21, 2021Updated 5 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated last year
- ☆12Feb 19, 2021Updated 5 years ago
- ☆15Aug 22, 2016Updated 9 years ago
- Static plotting for spatialdata☆82Jul 10, 2026Updated last week
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 4 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆67Mar 31, 2023Updated 3 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆45Jun 11, 2026Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆53Feb 4, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆102Dec 11, 2023Updated 2 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 10 months ago
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- ☆42Dec 4, 2023Updated 2 years ago
- ☆14Jul 9, 2023Updated 3 years ago
- Calculation of the Ripley K (spatial statistics) value in python☆13Sep 29, 2025Updated 9 months ago