MargoKapustina / XeniumSpatialAnalysisLinks
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
☆21Updated last month
Alternatives and similar repositories for XeniumSpatialAnalysis
Users that are interested in XeniumSpatialAnalysis are comparing it to the libraries listed below
Sorting:
- ☆28Updated 4 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- An R package for handling and analysing imaging mass cytometry data☆26Updated last week
- Multi-resolution Variational Inference☆22Updated 2 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- ☆52Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆53Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆67Updated 8 months ago
- ☆32Updated 10 months ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆11Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆48Updated 7 months ago
- CAST package☆40Updated 8 months ago
- iterative clustering pipeline of big single cell datasets.☆32Updated last month
- ☆13Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆71Updated 2 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆25Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 2 weeks ago
- ☆22Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- ☆13Updated last year
- Stitch multiple Visium slides together☆16Updated last year