Alternatives and similar repositories for ficture:

Users that are interested in ficture are comparing it to the libraries listed below

• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆44Updated 7 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆23Updated 6 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated last year
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆105Updated last week
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆23Updated 4 months ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆51Updated 2 years ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆19Updated last month
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆62Updated last week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated last month
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆39Updated 3 years ago
• whhudson / spatialTCR
  ☆12Updated 2 years ago
• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆76Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆29Updated 3 months ago
• raphael-group / GASTON
  ☆29Updated 2 weeks ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 2 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆52Updated this week
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆36Updated 5 months ago
• jian-shu-lab / Bering
  ☆15Updated last month
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆71Updated last week
• Teichlab / sctk
  ☆34Updated 4 months ago
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆36Updated last month
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆26Updated 3 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆74Updated last month
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆44Updated 7 months ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆86Updated 6 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated 3 weeks ago
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆25Updated 2 weeks ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆23Updated last year