☆47Jun 1, 2026Updated 2 months ago
Alternatives and similar repositories for ficture
Users that are interested in ficture are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 4 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated last month
- Conditional Autoencoders for Multiplexed Pixel Analysis☆19Nov 25, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆21Apr 8, 2025Updated last year
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 3 years ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 3 months ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- ☆37Oct 22, 2025Updated 9 months ago
- ☆55Oct 9, 2025Updated 10 months ago
- CAST package☆44Oct 26, 2024Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 2 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆48Jul 16, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Probabilistic cell segmentation for in situ spatial transcriptomics☆183Updated this week
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- An R package for performing cell typing in SMI and other single cell data☆53May 1, 2026Updated 3 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Static plotting for spatialdata☆82Updated this week
- ☆67Jul 2, 2026Updated last month
- ☆20Sep 19, 2025Updated 10 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian Segmentation of Spatial Transcriptomics Data☆209Jul 31, 2026Updated last week
- Latent Embedding Multivariate Regression☆102Jul 29, 2026Updated last week
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Implementation of CellNEST method☆70Jun 23, 2026Updated last month
- ☆17Dec 7, 2023Updated 2 years ago
- ☆100Aug 3, 2026Updated last week
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 9 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆17Jul 6, 2026Updated last month
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆16Apr 9, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- comseg☆24Feb 6, 2025Updated last year
- An open and interoperable data framework for spatial omics data☆383Updated this week
- ☆13Nov 3, 2023Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆476Jan 22, 2026Updated 6 months ago
- ☆11Jul 8, 2024Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago