☆44Feb 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for ficture
Users that are interested in ficture are comparing it to the libraries listed below
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Nov 16, 2025Updated 3 months ago
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆21Apr 8, 2025Updated 10 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 6 months ago
- CAST package☆42Oct 26, 2024Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆13Dec 6, 2025Updated 2 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆52Oct 9, 2025Updated 4 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Oct 1, 2023Updated 2 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 2 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆151Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆263Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Code used to benchmark Xenium☆76Jun 30, 2024Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆26Updated this week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆47Jul 16, 2024Updated last year
- ☆34Oct 22, 2025Updated 4 months ago
- An open and interoperable data framework for spatial omics data☆351Updated this week
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Dec 1, 2025Updated 2 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 8 months ago
- Python API and Jupyter widget for Vitessce☆62Feb 12, 2026Updated 2 weeks ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- ☆65Updated this week
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆30Nov 30, 2023Updated 2 years ago
- ☆99Sep 17, 2025Updated 5 months ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- ☆25Oct 25, 2023Updated 2 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated 7 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Feb 6, 2026Updated 3 weeks ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 11 months ago
- Interactive visualization of spatial omics data☆76Updated this week
- Static plotting for spatialdata☆73Feb 19, 2026Updated last week
- comseg☆24Feb 6, 2025Updated last year
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- ☆12May 29, 2024Updated last year
- ☆13Jun 6, 2024Updated last year
- ☆11Jul 8, 2024Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆438Jan 22, 2026Updated last month