Fast reconstruction of spatial networks from bioimages.
☆26Mar 27, 2026Updated 2 weeks ago
Alternatives and similar repositories for tysserand
Users that are interested in tysserand are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated 10 months ago
- ☆22Aug 17, 2023Updated 2 years ago
- ☆21Updated this week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Apr 5, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 2 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆41Updated this week
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 5 months ago
- Command-line client for Fractal☆49Updated this week
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Feb 27, 2026Updated last month
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆24Feb 24, 2025Updated last year
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated 6 months ago
- Interacting Active Surfaces☆10Jul 12, 2022Updated 3 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 8 months ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 3 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆16Updated this week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- ☆27Oct 12, 2024Updated last year
- Tool for segmentation in bioimaging☆36Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆30Oct 4, 2024Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 11 months ago
- ☆13Mar 10, 2020Updated 6 years ago
- PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…☆38Updated this week
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 2 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated 2 weeks ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Jul 29, 2022Updated 3 years ago
- ☆12May 29, 2024Updated last year
- ☆33Jul 31, 2025Updated 8 months ago
- MultiModal Big Image Data Sharing and Exploration☆19Jan 13, 2023Updated 3 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Code for the paper: Image Denoising and the Generative Accumulation of Photons☆22Aug 2, 2023Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year