Alternatives and similar repositories for metaspace-converter

Users that are interested in metaspace-converter are comparing it to the libraries listed below

• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• alexandrovteam / SpaceM
  ☆15Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆16Updated this week
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆31Updated this week
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆38Updated this week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆20Updated last week
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated 2 years ago
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆21Updated 6 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆23Updated last month
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆15Updated 6 months ago
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆23Updated last week
• HelenaLC / SpatialData
  ☆18Updated 5 months ago
• BiomedicalMachineLearning / Spacell
  ☆27Updated 5 years ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated 10 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated 9 months ago
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated 2 weeks ago
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆68Updated this week
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆31Updated 11 months ago
• angelolab / pixie
  Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering
  ☆11Updated 2 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated last month
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 3 years ago
• scverse / spatialdata-io
  ☆74Updated last week
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆57Updated this week