metaspace2020 / metaspace-converter
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
☆11Updated last year
Alternatives and similar repositories for metaspace-converter
Users that are interested in metaspace-converter are comparing it to the libraries listed below
Sorting:
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆25Updated last week
- ☆26Updated 7 months ago
- Optimal gating strategies for flow and mass cytometry.☆12Updated last month
- ☆12Updated 11 months ago
- Automatically annotate cell types, consistently across samples.☆11Updated last month
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated last week
- Slides and Notebooks for scverse 2024☆17Updated 7 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 5 months ago
- CAST package☆34Updated 6 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆22Updated 9 months ago
- Build contrasts for models defined with formulaic☆12Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- ☆15Updated 8 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆11Updated 2 weeks ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆17Updated last month
- Test genes for Spatial Variation☆14Updated 4 months ago
- ☆17Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 5 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 4 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- ☆29Updated last year
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆22Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆32Updated last month
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Updated 2 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- The complete FlowSOM package known from R, now available in Python!☆20Updated this week
- ☆13Updated 6 years ago
- ☆61Updated last week