Alternatives and similar repositories for metaspace-converter

Users that are interested in metaspace-converter are comparing it to the libraries listed below

• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆39Updated 2 weeks ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆25Updated last week
• alexandrovteam / SpaceM
  ☆15Updated last year
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆33Updated 2 weeks ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆21Updated 2 years ago
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated 2 weeks ago
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆22Updated 8 months ago
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆17Updated last week
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 3 years ago
• theislab / troutpy
  Package for the analysis of Transcripts outside segmented cells in ST data
  ☆24Updated last week
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆33Updated last year
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 6 months ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆40Updated last year
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆16Updated last month
• nf-core / molkart
  A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
  ☆14Updated last month
• bioFAM / mofaflex
  factor models for omics data
  ☆30Updated last week
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• HiDiHlabs / SpatialLeiden
  Implementation of multiplex Leiden for analysis of spatial omics data
  ☆14Updated last month
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆29Updated 2 weeks ago
• TheHumphreysLab / MALDIpy
  MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
  ☆14Updated last year
• scverse / spatialdata-notebooks
  ☆62Updated last week
• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆22Updated last week
• scverse / anndata-tutorials
  Use cases for anndata.
  ☆14Updated 6 months ago
• HelenaLC / SpatialData
  ☆19Updated 3 weeks ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆24Updated 3 months ago