metaspace2020 / metaspace-converter
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
☆11Updated last year
Alternatives and similar repositories for metaspace-converter:
Users that are interested in metaspace-converter are comparing it to the libraries listed below
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated last week
- ☆26Updated 6 months ago
- The complete FlowSOM package known from R, now available in Python!☆19Updated this week
- Optimal gating strategies for flow and mass cytometry.☆11Updated 2 weeks ago
- CAST package☆34Updated 5 months ago
- ☆15Updated 7 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆17Updated last month
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆10Updated 2 months ago
- ☆12Updated 10 months ago
- Test genes for Spatial Variation☆14Updated 4 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 4 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 4 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆26Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- Automatically annotate cell types, consistently across samples.☆10Updated last week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆16Updated 2 weeks ago
- ☆21Updated 4 years ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 5 months ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- SuperCell for Cytometry data☆12Updated last year
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Updated 2 years ago
- Segmentation error aware clustering for multiplexed imaging☆17Updated 3 months ago
- ☆13Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆53Updated 3 weeks ago
- ☆30Updated last year
- FISH Iterative Cell Typing☆11Updated last year