xiekunwhy / bsaLinks
Bulked-Segregant Analysis using vcf file with or without parents
☆29Updated 8 months ago
Alternatives and similar repositories for bsa
Users that are interested in bsa are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- ☆42Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated last week
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- scripts☆18Updated 6 years ago
- ☆22Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- ☆21Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last week
- Scripts of population genomics analysis☆36Updated 7 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- ☆27Updated 2 years ago
- ☆24Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- ☆37Updated last month
- Useful bioinformatic scripts☆58Updated 9 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆37Updated 2 months ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Scripts that used in our chicken T2T manuscript.☆20Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- ☆40Updated 2 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago