Bulked-Segregant Analysis using vcf file with or without parents
☆32Dec 20, 2024Updated last year
Alternatives and similar repositories for bsa
Users that are interested in bsa are comparing it to the libraries listed below
Sorting:
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆35Aug 1, 2025Updated 7 months ago
- QTL mapping with binmap data☆18May 18, 2019Updated 6 years ago
- SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.☆39Apr 5, 2019Updated 6 years ago
- Build haplotye and generate figures☆19Nov 4, 2025Updated 4 months ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆82Jan 20, 2020Updated 6 years ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- ☆21Sep 22, 2022Updated 3 years ago
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆22Aug 6, 2024Updated last year
- MutMap pipeline to identify causative mutations responsible for a phenotype☆65Jan 31, 2025Updated last year
- ☆23Jan 11, 2019Updated 7 years ago
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆63Jan 31, 2025Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆117Jul 22, 2025Updated 7 months ago
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated last month
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 4 years ago
- ☆12Apr 10, 2021Updated 4 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 5 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Jun 24, 2025Updated 8 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆102Jun 13, 2022Updated 3 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆18Feb 19, 2026Updated 2 weeks ago
- ☆14Jul 27, 2019Updated 6 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 6 years ago
- ☆18Feb 15, 2024Updated 2 years ago
- A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the…☆17Mar 19, 2023Updated 2 years ago
- ☆16Oct 9, 2024Updated last year
- Various bioinformatics tools☆20Oct 29, 2024Updated last year
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆39Dec 27, 2023Updated 2 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 2 years ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆22Feb 23, 2026Updated last week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- a Semi-automated pipeline for assembling T2T genome☆25Oct 16, 2025Updated 4 months ago
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆205Jul 5, 2025Updated 8 months ago
- circos pipeline☆20May 8, 2021Updated 4 years ago