LKremer / CAFE_figLinks
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
☆63Updated 6 years ago
Alternatives and similar repositories for CAFE_fig
Users that are interested in CAFE_fig are comparing it to the libraries listed below
Sorting:
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- NLR-Annotator upload☆71Updated 2 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆32Updated last year
- ☆82Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- Genome annotation pipeline☆61Updated last year
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆95Updated this week
- Neural network classification of TE☆96Updated 3 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆107Updated last month
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- Useful bioinformatic scripts☆57Updated 9 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 7 months ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆80Updated 2 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- ☆79Updated 2 months ago
- ☆77Updated 5 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆97Updated 3 weeks ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- This is the standalone version of the EviAnn pipeline☆117Updated 2 weeks ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆66Updated 5 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 3 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆57Updated last week
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated this week
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆85Updated last year
- A novel genome assembly pipeline based on deep learning☆65Updated 9 months ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆58Updated last year