Alternatives and similar repositories for USalign

Users that are interested in USalign are comparing it to the libraries listed below

• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆151Updated 9 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆137Updated 2 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆131Updated 2 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆170Updated 2 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆173Updated 3 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆294Updated last year
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆186Updated last month
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆122Updated last year
• westlake-repl / SaprotHub
  Making Protein Language Modeling Accessible to All Biologists
  ☆147Updated last week
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆183Updated 2 years ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆127Updated 3 weeks ago
• AlexanderKroll / ESP
  ☆77Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆113Updated last week
• aqlaboratory / rgn2
  ☆109Updated 2 years ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 10 months ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆172Updated 4 months ago
• jcheongs / alphafold-multimer
  ☆33Updated 3 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆133Updated 4 years ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆71Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆170Updated 2 months ago
• varun-shanker / structural-evolution
  ☆122Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆114Updated 8 months ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆168Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆142Updated 10 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆155Updated 2 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆115Updated 6 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆110Updated last week
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆224Updated 5 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆220Updated 2 years ago