Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
☆179Mar 29, 2026Updated last month
Alternatives and similar repositories for USalign
Users that are interested in USalign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jul 21, 2023Updated 2 years ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,226Mar 10, 2026Updated last month
- Fast protein structure searching or your money back☆118Apr 13, 2026Updated 2 weeks ago
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 2 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆271Jan 31, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- Neural Networks for Protein Sequence Alignment☆136Nov 11, 2024Updated last year
- ☆567Feb 6, 2025Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆99Jul 29, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆29Apr 2, 2026Updated 3 weeks ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆419Jul 3, 2023Updated 2 years ago
- ☆212Apr 21, 2025Updated last year
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- ColabFold on your local PC☆850Apr 21, 2026Updated last week
- This repo is outdated. Please use https://github.com/pylelab/USalign instead☆17May 26, 2021Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- OmegaFold Release Code☆618Dec 12, 2022Updated 3 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆17May 6, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,033Apr 16, 2026Updated 2 weeks ago
- ☆118Dec 7, 2022Updated 3 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆184Oct 7, 2025Updated 6 months ago
- ☆31Dec 12, 2024Updated last year
- Making Protein Language Modeling Accessible to All Biologists☆161Updated this week
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆116Apr 21, 2026Updated last week
- Python implementation of the TMscore program☆43Apr 29, 2024Updated 2 years ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Dec 27, 2022Updated 3 years ago
- Remote protein homology detection suite.☆617Aug 12, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast protein backbone generation with SE(3) flow matching.☆324Jul 19, 2024Updated last year
- ☆17Aug 10, 2020Updated 5 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 9 months ago
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆523Mar 22, 2026Updated last month
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago