☆29Apr 2, 2026Updated 3 weeks ago
Alternatives and similar repositories for PatchMAN
Users that are interested in PatchMAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- ☆28Dec 6, 2022Updated 3 years ago
- ☆20Oct 4, 2022Updated 3 years ago
- ☆11Apr 21, 2023Updated 3 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆18May 2, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 3 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16May 16, 2019Updated 6 years ago
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 4 years ago
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆19Aug 20, 2021Updated 4 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- ☆13May 26, 2022Updated 3 years ago
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 3 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆19Mar 1, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Dec 27, 2022Updated 3 years ago
- Physical energy function for protein sequence design☆38May 6, 2023Updated 2 years ago
- protein docking stuff☆52Apr 2, 2026Updated 3 weeks ago
- ☆18Mar 13, 2024Updated 2 years ago
- Rotamer Interaction Field Python Libraries for Computational Protein Design☆14Feb 2, 2018Updated 8 years ago
- AutoDock CrankPep for peptide and disordered protein docking☆62Oct 28, 2025Updated 6 months ago
- ☆24May 19, 2025Updated 11 months ago
- Protein-Protein Docking using Genetic Algorithm☆20Updated this week
- An integrated framework for chemical reaction feasibility prediction. This is a structured solution for one of the Chemistry Challenges o…☆12May 31, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- trRosetta for protein design☆186May 15, 2021Updated 4 years ago
- Rifdock Library for Conformational Search☆172May 16, 2024Updated last year
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 9 months ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 7 years ago
- ☆38Dec 21, 2023Updated 2 years ago
- ☆109Apr 1, 2023Updated 3 years ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆41Jul 8, 2023Updated 2 years ago
- ☆93Sep 7, 2022Updated 3 years ago
- ☆31Aug 16, 2025Updated 8 months ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Apr 2, 2026Updated 3 weeks ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- ☆13Jul 11, 2023Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 8 months ago