Alternatives and similar repositories for PatchMAN

Users that are interested in PatchMAN are comparing it to the libraries listed below

• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆34Updated 2 years ago
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 9 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆43Updated 7 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 5 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated last year
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 9 months ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆30Updated 3 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• RosettaCommons / FvHallucinator
  ☆28Updated 3 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 5 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• PKUliujl / GeoSeqBuilder
  ☆32Updated 10 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆16Updated 2 years ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆19Updated 10 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 9 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 9 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated last month
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• strauchlab / scaffold_design
  ☆18Updated last year
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago