Alternatives and similar repositories for PatchMAN:

Users that are interested in PatchMAN are comparing it to the libraries listed below

• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆29Updated last year
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆23Updated 5 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆27Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 4 months ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• luwei0917 / AlphaFold3_PPI
  ☆14Updated 11 months ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆12Updated last month
• AmeyaHarmalkar / therML
  The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
  ☆7Updated last year
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 2 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆33Updated this week
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• masoudk / AsiteDesign
  ☆13Updated last year
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆26Updated 3 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆47Updated 2 weeks ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆31Updated 6 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆32Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆56Updated 2 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 8 months ago
• JosePereiraUA / rosetta-scripts
  Some Rosetta Scripts that allow for various simple tasks
  ☆14Updated 5 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆31Updated last year
• Nucleus2014 / protease-gcnn-pytorch
  ☆19Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• RosettaCommons / FvHallucinator
  ☆27Updated 2 years ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆16Updated 3 months ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆38Updated 5 months ago
• zhenglz / OnionNet-SFCT
  Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term
  ☆27Updated 5 months ago