DunbrackLab / ProtCID
Protein common interface databases
☆9Updated 5 years ago
Alternatives and similar repositories for ProtCID:
Users that are interested in ProtCID are comparing it to the libraries listed below
- an accurate approach for predicting protein-protein affinity changes upon interfacial amino-acid mutations by combining physics and evolu…☆12Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆16Updated last week
- Protein-protein binding affinity benchmark☆13Updated last month
- ☆15Updated 2 years ago
- ☆13Updated 7 years ago
- Structural space exploration of AlphaFold DB☆12Updated 3 years ago
- ☆28Updated 10 months ago
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆10Updated 4 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated 11 months ago
- ☆9Updated last year
- ☆22Updated last year
- Graph Learning of INTER-protein contacts☆9Updated 3 years ago
- Python package to manage protein structures and their annotations☆42Updated last year
- A program fror inter-protein contact prediction from structures of interacting proteins☆17Updated 9 months ago
- Machine learning prediction of enzyme optimum pH☆29Updated 2 weeks ago
- ☆26Updated 7 months ago
- Kuhlman Lab Installation of AlphaFold3☆23Updated 2 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆15Updated 3 months ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆12Updated last month
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 3 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆15Updated 3 months ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆17Updated last month
- Geometry-aware protein binding site predictor☆18Updated 7 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- software used in paper "Antibody interface prediction with 3D Zernike descriptors and SVM"☆12Updated 4 years ago
- MEGADOCK on Google Colaboratory☆15Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆16Updated last year
- Improved ab initio protein structure reconstruction☆15Updated 7 years ago
- ☆11Updated 3 years ago
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆25Updated last year