Alternatives and similar repositories for ProtCID

Users that are interested in ProtCID are comparing it to the libraries listed below

• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated 2 years ago
• Faezov / PDBrenum
  ☆30Updated 3 months ago
• sarisabban / RosettaAbinitio
  A bash script for an automated Rosetta Abinitio folding simulation on an HPC
  ☆10Updated 4 years ago
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆15Updated 6 months ago
• tommyhuangthu / SSIPe
  EvoEF + evolutionary profile for ddG_bind prediction
  ☆14Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• wells-wood-research / BAlaS
  Source code for the BUDE Alanine Scan web application.
  ☆12Updated 3 months ago
• TurtleTools / alphafold-structural-space
  Structural space exploration of AlphaFold DB
  ☆12Updated 3 years ago
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆16Updated 8 months ago
• ProteinUniverseAtlas / AFDB90v4
  ☆17Updated last year
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆17Updated last year
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 3 years ago
• KeatingLab / PixelDB
  ☆13Updated 7 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• vosslab / vossvolvox
  3v: Voss Volume Voxelator
  ☆12Updated 3 weeks ago
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆28Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated last month
• Qrouger / PPIFold
  ☆20Updated 3 weeks ago
• proteinphysiologylab / frustratometeR
  ☆36Updated 2 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• Hoecker-Lab / protlego
  Automated construction of protein chimeras and their analysis.
  ☆15Updated last year
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated 2 months ago
• fteufel / alphafold-peptide-receptors
  Identifying peptide-receptor interactions using AlphaFold-Multimer
  ☆27Updated last year
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• GodzikLab / FATCAT-dist
  ☆17Updated 2 years ago
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆36Updated 5 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• LPDI-EPFL / rstoolbox
  Python Toolbox For Rosetta Silent Files Processing
  ☆16Updated 6 years ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆29Updated 3 months ago
• PDB-REDO / AlphaBridge
  ☆40Updated last week