Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
☆176Dec 24, 2023Updated 2 years ago
Alternatives and similar repositories for alphafold_finetune
Users that are interested in alphafold_finetune are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated last month
- ☆119Dec 7, 2022Updated 3 years ago
- Making Protein folding accessible to all!☆26Mar 22, 2026Updated 4 months ago
- An open-source platform for developing protein models beyond AlphaFold.☆419Jun 26, 2024Updated 2 years ago
- Public version for Distance-AF☆32Aug 17, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated 11 months ago
- ☆51Mar 30, 2026Updated 3 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 9 months ago
- Making Protein Design accessible to all via Google Colab!☆925Apr 6, 2026Updated 3 months ago
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 3 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Code for ColabDock paper☆157May 1, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆57Apr 15, 2026Updated 3 months ago
- predicting peptide-protein interactions☆141Dec 23, 2023Updated 2 years ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆172Sep 8, 2024Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆418Feb 26, 2026Updated 5 months ago
- Open source code for AlphaFold.☆39May 6, 2026Updated 2 months ago
- Antigen-receptor Design Against Peptide-MHC Targets☆21Jan 9, 2026Updated 6 months ago
- ☆252May 22, 2023Updated 3 years ago
- Code for the ProteinMPNN paper☆1,807Aug 14, 2024Updated last year
- Fragment binding prediction with ColabFold☆45Nov 9, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- List of papers about Proteins Design using Deep Learning☆1,954Updated this week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆101Jul 29, 2024Updated 2 years ago
- Modelling of Large Protein Complexes☆39Aug 8, 2025Updated 11 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆281Feb 14, 2024Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆284Mar 30, 2023Updated 3 years ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆547Feb 19, 2025Updated last year
- ☆38Dec 21, 2023Updated 2 years ago
- OmegaFold Release Code☆625Dec 12, 2022Updated 3 years ago
- ☆40Jan 26, 2026Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆33Jun 1, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- ☆39Aug 28, 2023Updated 2 years ago
- ☆608Feb 6, 2025Updated last year
- Tool to design cyclic peptides that mimic proteins and target their binding partners.☆17Jul 9, 2024Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago