Fast and accurate protein domain segmentation using Invariant Point Attention
☆47May 22, 2025Updated last year
Alternatives and similar repositories for Merizo
Users that are interested in Merizo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆51Sep 25, 2024Updated last year
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated 9 months ago
- ☆16Dec 10, 2024Updated last year
- A domain parser for Alphafold models☆49Dec 12, 2023Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ML toolset for creating TED: The Encyclopedia of Domains☆28May 29, 2025Updated last year
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆104Jun 9, 2025Updated last year
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 3 years ago
- ☆33Mar 2, 2026Updated 4 months ago
- Deep generative modeling of protein structural ensembles☆39May 27, 2026Updated last month
- ☆15Jun 25, 2026Updated 3 weeks ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 3 months ago
- PLaTITO is an open-source model for generative molecular dynamics of proteins.☆25May 6, 2026Updated 2 months ago
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 3 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆60Jan 28, 2026Updated 5 months ago
- Fast and accurate protein structure prediction☆58Jan 17, 2025Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated 2 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 8 months ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆133Aug 3, 2025Updated 11 months ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast indexing and search of discontinuous motifs in protein structures☆199Jul 10, 2026Updated last week
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆158Nov 15, 2024Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆17Sep 30, 2024Updated last year
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆19Jun 9, 2022Updated 4 years ago
- ☆18Aug 28, 2023Updated 2 years ago
- ☆77Sep 25, 2024Updated last year
- Modelling protein conformational landscape with Alphafold☆61Aug 29, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆22Mar 13, 2026Updated 4 months ago
- ☆212Apr 21, 2025Updated last year
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆19Dec 29, 2025Updated 6 months ago
- Shrinking Proteins with Diffusion☆29Jan 8, 2026Updated 6 months ago
- ☆48Mar 7, 2026Updated 4 months ago
- C-library for calculating Solvent Accessible Surface Areas☆200May 31, 2026Updated last month
- Compressing protein structures effectively with torsion angles☆194Jun 30, 2026Updated 3 weeks ago