Fast and accurate protein domain segmentation using Invariant Point Attention
☆46May 22, 2025Updated 11 months ago
Alternatives and similar repositories for Merizo
Users that are interested in Merizo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆49Sep 25, 2024Updated last year
- Fast protein domain structure embedding+search tool☆29Sep 21, 2025Updated 7 months ago
- ☆16Dec 10, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- A domain parser for Alphafold models☆48Dec 12, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆103Jun 9, 2025Updated 10 months ago
- ☆33Mar 2, 2026Updated last month
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 11 months ago
- ☆21Apr 10, 2026Updated 2 weeks ago
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 3 years ago
- Fast protein structure searching or your money back☆118Apr 13, 2026Updated 2 weeks ago
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 3 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆138Apr 23, 2026Updated last week
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Benchmarking code accompanying the release of `bioemu`☆58Updated this week
- code for SeqDance/ESMDance, biophysics-informed protein language models☆59Jan 28, 2026Updated 3 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated last week
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- Fast and accurate protein structure prediction☆58Jan 17, 2025Updated last year
- Deep generative modeling of protein structural ensembles☆37Apr 20, 2026Updated last week
- protein structure generation with sparse all-atom denoising models☆61Apr 23, 2026Updated last week
- protein backbone refinement☆15Sep 12, 2024Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆154Nov 15, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 👑 A lightweight molecular dynamics pipeline for running protein simulations on portable hardware☆38Mar 23, 2026Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆17Sep 30, 2024Updated last year
- ☆18Aug 28, 2023Updated 2 years ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆59Apr 15, 2026Updated 2 weeks ago
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 8 months ago
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆23Mar 13, 2026Updated last month
- ☆75Sep 25, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆48Mar 7, 2026Updated last month
- ☆212Apr 21, 2025Updated last year
- C-library for calculating Solvent Accessible Surface Areas☆184Nov 15, 2025Updated 5 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆228Jan 3, 2026Updated 3 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆277Feb 14, 2024Updated 2 years ago