RNA Multiple Sequence Alignment
☆53Jul 20, 2023Updated 3 years ago
Alternatives and similar repositories for rMSA
Users that are interested in rMSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆69May 8, 2026Updated 3 months ago
- ☆39Dec 15, 2023Updated 2 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Aug 10, 2026Updated 2 weeks ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆39Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆389May 27, 2025Updated last year
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 3 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024☆29May 27, 2025Updated last year
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 9 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆131Updated this week
- ☆35Jun 29, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆37Apr 3, 2021Updated 5 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆186Updated this week
- ☆13Updated this week
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆245May 29, 2025Updated last year
- ☆35Jan 14, 2025Updated last year
- parKVFinder: thread-level parallel KVFinder☆16May 9, 2025Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated 2 years ago
- Source code of the Stanford Ribonanza RNA Folding first place solution☆42Dec 21, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI☆18May 19, 2025Updated last year
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- ☆43Oct 1, 2023Updated 2 years ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆46May 3, 2026Updated 3 months ago
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆33Jan 27, 2023Updated 3 years ago
- ☆22Dec 20, 2024Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- ☆96Oct 9, 2024Updated last year
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆317Dec 16, 2025Updated 8 months ago
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆43Updated this week
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆16Feb 26, 2025Updated last year
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- ☆16Sep 6, 2022Updated 3 years ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year