RNA Multiple Sequence Alignment
☆48Jul 20, 2023Updated 2 years ago
Alternatives and similar repositories for rMSA
Users that are interested in rMSA are comparing it to the libraries listed below
Sorting:
- ☆38Dec 15, 2023Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆63Feb 12, 2026Updated 2 weeks ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Updated this week
- Nature Methods: RNA foundation model (together with RhoFold)☆354May 27, 2025Updated 9 months ago
- Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024☆28May 27, 2025Updated 9 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆216May 29, 2025Updated 9 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆40Sep 23, 2025Updated 5 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Feb 4, 2026Updated 3 weeks ago
- ☆12Feb 6, 2026Updated 3 weeks ago
- parKVFinder: thread-level parallel KVFinder☆15May 9, 2025Updated 9 months ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆38Nov 19, 2025Updated 3 months ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆287Dec 16, 2025Updated 2 months ago
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆26Nov 26, 2025Updated 3 months ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Jun 10, 2022Updated 3 years ago
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 2 years ago
- ☆42Jan 28, 2026Updated last month
- ☆34Jun 29, 2024Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 4 years ago
- ☆21Dec 20, 2024Updated last year
- Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI☆17May 19, 2025Updated 9 months ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆20Apr 5, 2024Updated last year
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated 11 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆125Feb 16, 2026Updated last week
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- ☆36Jan 14, 2025Updated last year
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆29Dec 7, 2025Updated 2 months ago
- Source code of the Stanford Ribonanza RNA Folding first place solution☆41Dec 21, 2023Updated 2 years ago
- ☆41Oct 1, 2023Updated 2 years ago
- Awesome AI-aided Drug Discovery☆35Jun 6, 2024Updated last year
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆10Jun 16, 2022Updated 3 years ago
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- Unofficially Implements https://arxiv.org/abs/2112.05682 to get Linear Memory Cost on Attention for PyTorch☆12Jan 16, 2022Updated 4 years ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- ☆26May 9, 2022Updated 3 years ago