Alternatives and similar repositories for rMSA

Users that are interested in rMSA are comparing it to the libraries listed below

• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆62Updated 3 weeks ago
• robpearc / DeepFoldRNA
  ☆38Updated 2 years ago
• aqlaboratory / rgn2
  ☆109Updated 2 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆117Updated 6 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆91Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆80Updated 4 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• AlexanderKroll / ESP
  ☆77Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆53Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated 2 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆127Updated 2 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆76Updated 4 years ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆131Updated 3 weeks ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆138Updated 2 months ago
• yoakiyama / MSA_Pairformer
  ☆128Updated 2 weeks ago
• Doudna-lab / GARNET_DL
  ☆36Updated last year
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆82Updated 2 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆117Updated 3 months ago
• AbSciBio / igdesign
  ☆47Updated last year
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆70Updated 5 months ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated 2 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆85Updated last year
• steineggerlab / foldseek-analysis
  Scripts to benchmark and train foldseek
  ☆40Updated last year
• tymor22 / tm-vec
  ☆76Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆118Updated 2 years ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆86Updated last year
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆72Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago
• DeepRank / deeprank2
  An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
  ☆56Updated last year