RNA Multiple Sequence Alignment
☆51Jul 20, 2023Updated 2 years ago
Alternatives and similar repositories for rMSA
Users that are interested in rMSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65May 8, 2026Updated last week
- ☆38Dec 15, 2023Updated 2 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆186Apr 8, 2026Updated last month
- Scalable Deep Learning for RNA Secondary Structure Prediction☆42Sep 23, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 3 years ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆43May 3, 2026Updated 2 weeks ago
- Nature Methods: RNA foundation model (together with RhoFold)☆369May 27, 2025Updated 11 months ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆231May 29, 2025Updated 11 months ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆301Dec 16, 2025Updated 5 months ago
- ☆35Jun 29, 2024Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12May 13, 2026Updated last week
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 7 years ago
- parKVFinder: thread-level parallel KVFinder☆15May 9, 2025Updated last year
- ☆37Jan 14, 2025Updated last year
- Source code of the Stanford Ribonanza RNA Folding first place solution☆41Dec 21, 2023Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI☆17May 19, 2025Updated last year
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 2 years ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆47Jan 28, 2026Updated 3 months ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆34May 14, 2026Updated last week
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆29Jan 27, 2023Updated 3 years ago
- Awesome AI-aided Drug Discovery☆38Jun 6, 2024Updated last year
- ☆43Oct 1, 2023Updated 2 years ago
- ☆94Oct 9, 2024Updated last year
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆15Sep 27, 2022Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- ☆34Oct 14, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆59Oct 8, 2024Updated last year
- ☆22Dec 20, 2024Updated last year
- ☆16Sep 6, 2022Updated 3 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆69Jul 22, 2024Updated last year
- ☆17Jun 22, 2024Updated last year
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆39Feb 25, 2026Updated 2 months ago
- scripts for parsing PDB, fasta, and GO☆16Oct 20, 2021Updated 4 years ago