Detection of remote homology by comparison of protein language model representations
☆66Oct 22, 2026Updated last week
Alternatives and similar repositories for pLM-BLAST
Users that are interested in pLM-BLAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated 7 months ago
- Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins☆16Nov 5, 2023Updated 2 years ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆28Dec 5, 2024Updated last year
- Neural Networks for Protein Sequence Alignment☆141Nov 11, 2024Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆83Sep 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated last year
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 6 months ago
- ☆76Sep 25, 2024Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆23Sep 9, 2025Updated last year
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- Pathogenfinder2☆19Apr 20, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆27Dec 17, 2023Updated 2 years ago
- Pretrained METL models with minimal dependencies☆18Sep 16, 2026Updated last month
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 11 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆65Sep 14, 2026Updated last month
- Fast indexing and search of discontinuous motifs in protein structures☆221Oct 15, 2026Updated 2 weeks ago
- Protein structure alignment and search algorithm☆102Sep 9, 2026Updated last month
- GTalign, high-performance macromolecular structure alignment, superposition and search☆61Oct 22, 2026Updated last week
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- ☆10Apr 12, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,323Sep 9, 2026Updated last month
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 7 months ago
- ☆91Nov 18, 2025Updated 11 months ago
- Algorithm for ultra-scale multiple protein sequence alignments: 3 million ABC transporters analyzed in 5 minutes and 18 GB of RAM.☆277Sep 10, 2026Updated last month
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆193Oct 19, 2026Updated last week
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- ☆22Jul 14, 2023Updated 3 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- ☆95Sep 25, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Compressing protein structures effectively with torsion angles☆199Sep 7, 2026Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆186Oct 18, 2026Updated 2 weeks ago
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.☆11Mar 25, 2026Updated 7 months ago
- Protein Structure Archiver☆16Sep 10, 2025Updated last year
- Protein sequence domain annotation with a language model☆36Aug 19, 2026Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆128Jun 28, 2026Updated 4 months ago
- Fast, accurate construction of multiple sequence alignments from protein language embeddings☆23Jul 22, 2026Updated 3 months ago