☆628Feb 6, 2025Updated last year
Alternatives and similar repositories for LigandMPNN
Users that are interested in LigandMPNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inference code for RFdiffusion2☆440Apr 3, 2026Updated 5 months ago
- Code for the ProteinMPNN paper☆1,839Aug 14, 2024Updated 2 years ago
- Public RFDiffusionAA repo☆486Jul 9, 2024Updated 2 years ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆263Nov 5, 2025Updated 9 months ago
- ☆150Jul 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- User friendly and accurate binder design pipeline☆1,201Aug 12, 2026Updated 3 weeks ago
- ☆259Feb 12, 2026Updated 6 months ago
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆950Updated this week
- Code for running RFdiffusion☆3,035Jul 15, 2026Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆265Mar 26, 2026Updated 5 months ago
- ☆417Aug 7, 2024Updated 2 years ago
- ☆818May 18, 2026Updated 3 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago
- Making Protein Design accessible to all via Google Colab!☆937Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆78May 4, 2026Updated 4 months ago
- A generalized computational framework for biomolecular modeling.☆444Aug 20, 2026Updated 2 weeks ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,048Aug 1, 2026Updated last month
- BoltzGen: Toward Universal Binder Design☆1,049May 28, 2026Updated 3 months ago
- Official repository for the Boltz biomolecular interaction models☆4,196May 29, 2026Updated 3 months ago
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆873Updated this week
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆83Jul 2, 2025Updated last year
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆88Jul 23, 2026Updated last month
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆544Mar 22, 2026Updated 5 months ago
- Official repository of PXDesign☆254Dec 31, 2025Updated 8 months ago
- A generative model for programmable protein design☆830Apr 11, 2024Updated 2 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆97Jul 31, 2026Updated last month
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 5 months ago
- List of papers about Proteins Design using Deep Learning☆1,974Aug 15, 2026Updated 2 weeks ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆132Oct 30, 2025Updated 10 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆421Updated this week
- In silico directed evolution of peptide binders with AlphaFold☆277Aug 27, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.☆468Updated this week
- ☆86Mar 23, 2026Updated 5 months ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,991Jun 30, 2026Updated 2 months ago
- ☆527Mar 5, 2026Updated 5 months ago
- composite-objective protein design☆363Aug 11, 2026Updated 3 weeks ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆272Jul 24, 2025Updated last year