Alternatives and similar repositories for DeepCov:

Users that are interested in DeepCov are comparing it to the libraries listed below

• ElofssonLab / PconsC4
  Fast and easy contact prediction.
  ☆38Updated 9 months ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• largelymfs / deepcontact
  DeepContact Software
  ☆26Updated 6 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆55Updated 3 years ago
• multicom-toolbox / DNCON2
  Deep convolutional neural networks for protein contact map prediction
  ☆23Updated 5 years ago
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆41Updated 2 years ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆53Updated 2 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 10 months ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆50Updated last month
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆55Updated 2 years ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆15Updated 5 years ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆40Updated 2 years ago
• Graylab / deepH3-distances-orientations
  ☆34Updated 3 years ago
• leeyang / ResPRE
  ResPRE is an algorithm for protein residue-residue contact-map prediction
  ☆21Updated 5 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated 11 months ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated 7 months ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆26Updated 4 years ago
• sarisabban / RamaNet
  Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
  ☆50Updated 3 years ago
• psipred / DeepMetaPSICOV
  Deep ResNet-based protein contact prediction
  ☆19Updated 4 years ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆30Updated 4 years ago
• j3xugit / RaptorX-Contact
  Deep residual neural network for protein contact/distance prediction developed by Xu group
  ☆78Updated 4 years ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆100Updated 3 years ago
• fhalab / SPGen
  ☆19Updated 3 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆111Updated 3 years ago