Alternatives and similar repositories for DeepCov

Users that are interested in DeepCov are comparing it to the libraries listed below

• largelymfs / deepcontact
  DeepContact Software
  ☆26Updated 7 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆60Updated 4 years ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆58Updated 3 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆61Updated 2 years ago
• ElofssonLab / PconsC4
  Fast and easy contact prediction.
  ☆38Updated last year
• sokrypton / map_align
  Contact map alignment
  ☆42Updated 5 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• multicom-toolbox / DNCON2
  Deep convolutional neural networks for protein contact map prediction
  ☆23Updated 6 years ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆72Updated 8 months ago
• leeyang / ResPRE
  ResPRE is an algorithm for protein residue-residue contact-map prediction
  ☆21Updated 6 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 5 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆26Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆58Updated 6 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆60Updated last week
• Graylab / deepH3-distances-orientations
  ☆35Updated 4 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated last year
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆35Updated 5 years ago
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 5 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆48Updated 3 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆94Updated 2 years ago
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆89Updated 4 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• alexarnimueller / LSTM_peptides
  Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
  ☆77Updated 2 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 5 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆112Updated 2 years ago
• aqlaboratory / rgn2
  ☆109Updated 2 years ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆62Updated 3 weeks ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆99Updated 4 years ago