psipred / DeepCovLinks
Fully convolutional neural networks for protein residue-residue contact prediction
☆43Updated 6 years ago
Alternatives and similar repositories for DeepCov
Users that are interested in DeepCov are comparing it to the libraries listed below
Sorting:
- DeepContact Software☆26Updated 7 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- Contact map alignment☆41Updated 4 years ago
- Fast and easy contact prediction.☆38Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆53Updated 5 months ago
- ☆29Updated 5 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Neural networks for deep mutational scanning data☆71Updated 7 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆111Updated 2 years ago
- A Python 3 version of the protein descriptor package propy☆46Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 9 months ago
- ☆127Updated 4 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Updated 6 years ago
- DeepAlign: the protein structure analysis toolkit☆41Updated 5 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- ☆108Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- ☆23Updated 4 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆35Updated 5 years ago
- ☆35Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆61Updated 3 weeks ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Updated 4 years ago