psipred / DeepCovLinks
Fully convolutional neural networks for protein residue-residue contact prediction
☆43Updated 6 years ago
Alternatives and similar repositories for DeepCov
Users that are interested in DeepCov are comparing it to the libraries listed below
Sorting:
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- DeepContact Software☆26Updated 7 years ago
- Fast and easy contact prediction.☆38Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 2 years ago
- Contact map alignment☆41Updated 4 years ago
- ☆29Updated 5 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- A Python 3 version of the protein descriptor package propy☆44Updated 2 years ago
- Paratope Prediction using Deep Learning☆60Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆52Updated last month
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆62Updated 5 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆109Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Neural networks for deep mutational scanning data☆69Updated 2 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- ☆35Updated 3 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 4 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆76Updated 2 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Updated 6 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Updated 4 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆117Updated 3 years ago
- ☆127Updated 4 years ago
- ☆23Updated 4 years ago
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago