pylelab / ArenaLinks
☆17Updated 2 years ago
Alternatives and similar repositories for Arena
Users that are interested in Arena are comparing it to the libraries listed below
Sorting:
- ☆41Updated 2 years ago
- ☆40Updated last year
- Public version for Distance-AF☆30Updated 5 months ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆18Updated last year
- ☆74Updated 10 months ago
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Updated last year
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆56Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆25Updated 8 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Updated last year
- Tool for modelling the CDRs of antibodies☆50Updated 3 years ago
- ☆28Updated 5 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43Updated last year
- Code for humanization of antibody and nanobody☆72Updated 5 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 2 months ago
- Extension of ThermoMPNN for double mutant predictions☆53Updated 3 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆43Updated last year
- Physical energy function for protein sequence design☆36Updated 2 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆45Updated 3 years ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated 2 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Updated 3 months ago
- Gibbs sampling for generating protein sequences☆58Updated last year
- protein structure generation with sparse all-atom denoising models☆57Updated last month
- Tool for modelling the CDRs of antibodies☆34Updated 3 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82Updated 8 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated this week