3BioCompBio / pyScoMotifLinks
Python tool for the discovery of similar 3D structural motifs across protein structures.
☆35Updated 2 years ago
Alternatives and similar repositories for pyScoMotif
Users that are interested in pyScoMotif are comparing it to the libraries listed below
Sorting:
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 5 months ago
- Clusters protein chains based on CA distance difference☆16Updated 10 months ago
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- A Unified Approach to Protein Engineering☆42Updated last year
- Explicit crosslinks in AlphaFold 3☆23Updated 9 months ago
- Some scripts that I keep using over and over.☆21Updated 5 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated 3 weeks ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- Machine learning prediction of enzyme optimum pH☆48Updated 7 months ago
- Explore protein fold space with deep generative models☆16Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 7 months ago
- ☆22Updated last month
- ☆27Updated 4 months ago
- ☆39Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆43Updated 7 months ago
- Metal and Water prediction☆12Updated 10 months ago
- ☆15Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆37Updated 2 months ago
- ☆26Updated 4 months ago
- ☆36Updated 2 years ago
- ☆41Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆28Updated 9 months ago
- Humanness of de-novo designed proteins☆34Updated 7 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 9 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆40Updated 6 months ago
- Efficient manipulation of protein structures in Python☆60Updated 3 months ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆27Updated 5 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆56Updated last week
- Extension of ThermoMPNN for double mutant predictions☆49Updated 2 months ago