3BioCompBio / pyScoMotif
Python tool for the discovery of similar 3D structural motifs across protein structures.
☆27Updated last year
Alternatives and similar repositories for pyScoMotif:
Users that are interested in pyScoMotif are comparing it to the libraries listed below
- Kuhlman Lab Installation of AlphaFold3☆25Updated 2 weeks ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆32Updated last week
- Efficient manipulation of protein structures in Python☆53Updated 5 months ago
- PyDock Tutorial☆30Updated 6 years ago
- Machine learning prediction of enzyme optimum pH☆29Updated last month
- Clusters protein chains based on CA distance difference☆14Updated 2 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆16Updated 4 months ago
- ☆26Updated 8 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆36Updated 4 months ago
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- ☆34Updated 6 months ago
- ☆19Updated last year
- Code for deep learning guided design of dynamic proteins☆17Updated 8 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆16Updated last year
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated 3 weeks ago
- Explicit crosslinks in AlphaFold 3☆21Updated 3 weeks ago
- CArbohydrate-Protein Site IdentiFier☆11Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆46Updated 4 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated 6 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆26Updated 2 months ago
- Fragment binding prediction with ColabFold☆33Updated 3 weeks ago
- ☆65Updated 3 weeks ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆28Updated 10 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year
- ☆39Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 10 months ago
- A Unified Approach to Protein Engineering☆41Updated 9 months ago