Python tool for the discovery of similar 3D structural motifs across protein structures.
☆36Nov 18, 2023Updated 2 years ago
Alternatives and similar repositories for pyScoMotif
Users that are interested in pyScoMotif are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Sep 18, 2026Updated 3 weeks ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ☆42Aug 20, 2026Updated last month
- Fast indexing and search of discontinuous motifs in protein structures☆218Sep 18, 2026Updated 3 weeks ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest☆14Mar 22, 2023Updated 3 years ago
- ☆15Apr 3, 2025Updated last year
- A Light-Weight And Interpretable Molecular Docking Model☆26Oct 23, 2024Updated last year
- 3D-CNN based water position prediction method☆11Nov 20, 2023Updated 2 years ago
- A tool for protein and protein complex structure prediction.☆29Jun 13, 2025Updated last year
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- ☆18Aug 28, 2023Updated 3 years ago
- Kuhlman Lab Installation of AlphaFold3☆42Mar 26, 2026Updated 6 months ago
- ☆87May 18, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- Protein Structure Archiver☆16Sep 10, 2025Updated last year
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆24Nov 1, 2024Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆33Jul 28, 2026Updated 2 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆46Sep 7, 2026Updated last month
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆13May 10, 2026Updated 4 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 5 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆60Mar 12, 2026Updated 6 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 3 years ago
- ☆53Sep 25, 2024Updated 2 years ago
- ☆47Oct 17, 2025Updated 11 months ago
- AlphaFold-initiated replica exchange protein docking☆95Jun 5, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Transformer for protein function prediction (version 2)☆14Aug 31, 2026Updated last month
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆21Jun 9, 2022Updated 4 years ago
- ☆26Nov 28, 2025Updated 10 months ago
- ☆72Feb 13, 2026Updated 7 months ago
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated 2 years ago
- ☆36Jul 7, 2026Updated 3 months ago