Alternatives and similar repositories for 1000-genomes-genetic-maps

Users that are interested in 1000-genomes-genetic-maps are comparing it to the libraries listed below

• freeseek / gwaspipeline
  ☆40Updated 8 years ago
• atgu / hgdp_tgp
  ☆49Updated 6 months ago
• Nealelab / picopili
  Fork of ricopili for development of pipeline for family-based data
  ☆19Updated 7 months ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆34Updated 3 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆62Updated 6 years ago
• CshlSiepelLab / LINSIGHT
  ☆26Updated 7 months ago
• zhanxw / checkVCF
  Sanity check Variant Call Format (VCF) files.
  ☆37Updated 9 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆56Updated 3 months ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆78Updated 3 months ago
• broadinstitute / gnomad_qc
  ☆68Updated last week
• hoffmangroup / umap
  ☆30Updated 6 months ago
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆66Updated 4 years ago
• lukfor / pgs-calc
  Applying polygenic scores (PGS) on imputed genotypes
  ☆31Updated 3 months ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆91Updated 5 months ago
• fhormoz / caviar
  ☆63Updated 4 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆46Updated last year
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated 2 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆86Updated last week
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆57Updated 4 months ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated 2 years ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆95Updated 3 years ago
• zhouhufeng / FAVORannotator
  ☆22Updated 2 years ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆69Updated 7 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• zd1 / telseq
  A software for calculating telomere length
  ☆73Updated 7 years ago
• biocore-ntnu / epic
  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
  ☆31Updated 7 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆71Updated 2 years ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆83Updated last year