diazale / 1KGP_dimred
Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
☆20Updated 4 years ago
Alternatives and similar repositories for 1KGP_dimred:
Users that are interested in 1KGP_dimred are comparing it to the libraries listed below
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 2 weeks ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated this week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- ☆10Updated 5 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 4 months ago
- ☆25Updated 9 months ago
- software package for integrative genetic association analysis☆34Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last month
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago