Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
☆20Oct 25, 2020Updated 5 years ago
Alternatives and similar repositories for 1KGP_dimred
Users that are interested in 1KGP_dimred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- A set of tools for modelling ancestry patterns along the genome.☆24Updated this week
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Jun 17, 2021Updated 4 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 7 years ago
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆27Mar 14, 2025Updated last year
- ☆40Jan 24, 2018Updated 8 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆32Aug 14, 2024Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆33Sep 30, 2021Updated 4 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 10 months ago
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆22Jul 19, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A slightly opinionated iPython profile for interactive development☆24Feb 13, 2022Updated 4 years ago
- Fast Principal Component Analysis of Large-Scale Genome-Wide Data☆147Jul 26, 2022Updated 3 years ago
- ☆18Aug 25, 2025Updated 9 months ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated last month
- my own R course☆11Oct 14, 2014Updated 11 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- ☆11Feb 14, 2023Updated 3 years ago
- Rcpp: Export a C++ Class into R using Rcpp Modules. For this example, we aim to implement a custom student class.☆18Mar 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆11Nov 7, 2024Updated last year
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Variant catalogue pipeline☆26Jan 30, 2026Updated 3 months ago
- Sample code for ldsc analyses in UKBB☆34May 4, 2023Updated 3 years ago
- ☆15Nov 22, 2022Updated 3 years ago
- A web based application predicts water solubility of any given chemical compound known or unknown☆14Jul 4, 2021Updated 4 years ago
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- The present study is finalised to determine the most advanced models in the literature capable of producing new high-quality molecules st…☆10Aug 31, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Differential gene expression analysis on RNA-seq data☆13Apr 26, 2024Updated 2 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 11 months ago
- Hierarchical Greedy Graph☆16Jul 3, 2022Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆56Jul 18, 2018Updated 7 years ago
- Welcome to Colab_NAMD_suit, your gateway to running MD simulations!☆18Jun 25, 2024Updated last year
- Parse Copy Number Variation from Array and Sequencing☆19Dec 1, 2023Updated 2 years ago
- BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.☆18Nov 21, 2025Updated 6 months ago