jhavsmith / startmrcaLinks
An R package to estimate the timing of selection for a beneficial allele.
☆15Updated 3 years ago
Alternatives and similar repositories for startmrca
Users that are interested in startmrca are comparing it to the libraries listed below
Sorting:
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated last week
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- ☆12Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 5 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated last week
- Infer demographic history with the Moran model☆47Updated last month
- ☆42Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Software package for estimating fine-scale recombination rate.☆16Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- ☆31Updated 5 years ago
- ☆20Updated last year
- ☆37Updated last year
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 6 months ago
- Domain based annotation of transposable elements☆20Updated 3 months ago