Alternatives and similar repositories for degenotate

Users that are interested in degenotate are comparing it to the libraries listed below

• tvkent / GERPplusplus
  GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
  ☆20Updated 8 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated 3 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 8 months ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆42Updated 3 weeks ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆24Updated 4 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆53Updated last week
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 3 weeks ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆32Updated 8 months ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆56Updated last week
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆56Updated 2 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆32Updated last month
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆80Updated last month
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆40Updated 8 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆41Updated last week
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago