Alternatives and similar repositories for degenotate

Users that are interested in degenotate are comparing it to the libraries listed below

• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆57Updated last month
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆20Updated last year
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆36Updated 5 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆35Updated last year
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆45Updated 3 years ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆57Updated last year
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 2 months ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 8 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• vlothec / TRASH
  RepeatIdentifier
  ☆66Updated 3 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆53Updated 2 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• simon19891216 / CentIER
  ☆34Updated 10 months ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆25Updated 4 years ago
• Dee-chen / Tree2gd
  ☆41Updated 2 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated last year
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆51Updated last month
• RILAB / mop
  Simple tool for capturing alignment regions with sufficient quality for genotyping.
  ☆21Updated 3 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆42Updated 6 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆49Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆41Updated 10 months ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆60Updated 4 months ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 6 months ago