harvardinformatics / degenotateLinks
☆50Updated 2 weeks ago
Alternatives and similar repositories for degenotate
Users that are interested in degenotate are comparing it to the libraries listed below
Sorting:
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆42Updated last month
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆21Updated 8 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 9 months ago
- scripts for the project of seven thaliana genomes assembly☆39Updated 4 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- ☆24Updated 8 years ago
- Portable solution to generate genome alignment chains using lastz☆57Updated last month
- Likelihood-based Selective Sweep Detection☆38Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 5 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆33Updated 9 months ago
- ☆44Updated 8 years ago
- ☆40Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 8 months ago
- ☆30Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 2 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Graph-aware Retrieval of Selective Sweeps☆21Updated 9 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated last month
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- ☆30Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Infer demographic history with the Moran model☆47Updated 2 weeks ago