☆56Jun 12, 2025Updated 9 months ago
Alternatives and similar repositories for degenotate
Users that are interested in degenotate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome-wide IM blockwise likelihood estimation toolkit☆17Jun 24, 2024Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Mar 21, 2026Updated last week
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆22Aug 20, 2021Updated 4 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆13Aug 18, 2023Updated 2 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Mar 20, 2026Updated last week
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- Demographic analysis of Brassica oleracea☆10Jan 30, 2026Updated last month
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 4, 2026Updated 3 weeks ago
- ☆13Sep 11, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Fast inference of fine-scale recombination rates based on fused-LASSO☆57Feb 10, 2026Updated last month
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated last month
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- an R script for generating color combinations from Senzo Wada's "A Dictionary of Color Combinations"☆10Mar 18, 2019Updated 7 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 11 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆21Jan 11, 2024Updated 2 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆89Updated this week
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 7 months ago
- Tutorials on phylogenetic and phylogenomic inference☆396Sep 13, 2023Updated 2 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 9 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆65Mar 13, 2026Updated 2 weeks ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆44Mar 13, 2026Updated 2 weeks ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- machine learning applications for dadi☆17Jan 23, 2025Updated last year