ARG-based inference of selection using deep learning
☆18Aug 31, 2023Updated 3 years ago
Alternatives and similar repositories for arg-selection
Users that are interested in arg-selection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithm for rapid, phase-free detection of long identical by descent segments☆25Sep 24, 2026Updated 2 weeks ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 5 months ago
- Infer the age of ancestral nodes in a tree sequence.☆27Oct 5, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆58Jun 11, 2024Updated 2 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆50May 26, 2026Updated 4 months ago
- Haplotype based scans for selection☆150Jun 5, 2026Updated 4 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- ☆13Jul 8, 2026Updated 3 months ago
- Forward-time simulation in Python using fwdpp☆34Sep 16, 2026Updated 3 weeks ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆23Sep 21, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆59Aug 9, 2015Updated 11 years ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆22Aug 6, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- ☆16Aug 25, 2026Updated last month
- The SPrime program identifies variants that are introgressed from archaic populations.☆32May 21, 2022Updated 4 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated 2 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 9 years ago
- Topology weighting from unphased genotypes of any ploidy☆30Aug 13, 2026Updated last month
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated this week
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 8 months ago
- R code to compute the Singleton Density Score (SDS)☆31Sep 19, 2016Updated 10 years ago
- Sampling and inference of genealogies with recombination☆64Aug 21, 2026Updated last month
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- Short scripts for converting genetic data between formats.☆31Nov 11, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 11 months ago
- genotype dimensionality reduction with a VAE☆50Mar 11, 2025Updated last year
- Software for linkage disequilibrium graphical models☆18Apr 6, 2025Updated last year
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- ☆35Nov 11, 2025Updated 11 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆20Mar 31, 2026Updated 6 months ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago