CshlSiepelLab / arg-selection
ARG-based inference of selection using deep learning
☆17Updated last year
Alternatives and similar repositories for arg-selection:
Users that are interested in arg-selection are comparing it to the libraries listed below
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated last month
- Haplotype and population structure inference using neural networks.☆27Updated last month
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- ☆24Updated 7 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 4 months ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- R code to compute the Singleton Density Score (SDS)☆28Updated 8 years ago
- ☆22Updated 9 months ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆35Updated 2 weeks ago
- ☆20Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- ☆17Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆28Updated last year
- analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)☆11Updated 8 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- Selection outlier scan with population branch statistic☆13Updated 11 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- ☆24Updated 2 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 9 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated this week
- Sex assignment through coverage☆17Updated 10 months ago
- Repository for pipeline code☆24Updated 10 months ago