i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.
☆17Jun 28, 2024Updated 2 years ago
Alternatives and similar repositories for i-ADHoRe
Users that are interested in i-ADHoRe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Jan 21, 2026Updated 5 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 5 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆41Updated this week
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 5 months ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- Synteny Mapping and Analysis Program☆30Jun 9, 2026Updated 3 weeks ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ☆13May 27, 2025Updated last year
- TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)☆21Oct 9, 2019Updated 6 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 7 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- ☆11Mar 12, 2026Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆41Jul 23, 2025Updated 11 months ago
- Graph Clustering Merger☆36Mar 25, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆12Jan 23, 2026Updated 5 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 7 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 5 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆94Jun 21, 2026Updated last week
- Sketch phylogenetic trees and networks☆26Jun 25, 2026Updated last week
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- The PanGenome Graph Builder☆17Jul 17, 2024Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 5 months ago
- ☆21Feb 15, 2025Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 2 weeks ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated 2 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Mar 13, 2026Updated 3 months ago