WarrenLab / minigraph-cactus-nfLinks
a nextflow pipeline for creating a pangenome with minigraph-cactus
☆15Updated 8 months ago
Alternatives and similar repositories for minigraph-cactus-nf
Users that are interested in minigraph-cactus-nf are comparing it to the libraries listed below
Sorting:
- ☆35Updated last year
- ☆35Updated 2 weeks ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- A program for assessing the T2T genome continuity☆77Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆35Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- ☆28Updated last year
- ☆42Updated last year
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- ☆29Updated 5 months ago
- ☆76Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- ☆48Updated 11 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆14Updated 5 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- SV calling for diploid assemblies☆27Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Variant annotation and merging pipeline☆34Updated last week