WarrenLab / minigraph-cactus-nfLinks
a nextflow pipeline for creating a pangenome with minigraph-cactus
☆16Updated last year
Alternatives and similar repositories for minigraph-cactus-nf
Users that are interested in minigraph-cactus-nf are comparing it to the libraries listed below
Sorting:
- A program for assessing the T2T genome continuity☆92Updated last month
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Updated 3 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- Identification of transposable element families from pangenome polymorphisms☆55Updated 8 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆55Updated 6 months ago
- ☆38Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Show pangenome graphs in an easy way☆57Updated 6 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆45Updated 9 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- PacBio BAM toolkit☆49Updated 11 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- TGS scaffolding☆47Updated 4 years ago
- ☆29Updated 3 weeks ago
- ☆78Updated 5 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- ☆39Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆40Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- ☆119Updated 3 months ago
- ☆68Updated last week
- A tool for evaluating long-read de novo assembly results☆52Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Updated this week
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago