COMBINE-lab / pufferfish2Links
☆15Updated last year
Alternatives and similar repositories for pufferfish2
Users that are interested in pufferfish2 are comparing it to the libraries listed below
Sorting:
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated 2 weeks ago
- gia: Genomic Interval Arithmetic☆65Updated 11 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Python language bindings for bwa☆10Updated last month
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 10 months ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- Benchmarking pairwise aligners☆36Updated 6 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- A Rust library for building modular, fast and compact indexes over genomic data☆13Updated last year
- A SIMD-accelerated library to compute random minimizers☆33Updated 3 weeks ago
- Fast and exact gap-affine partial order alignment☆53Updated 3 weeks ago
- Nail is an Alignment Inference tooL☆50Updated this week
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆52Updated this week
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆65Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 4 months ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆56Updated last week
- ntHash implementation in Rust☆36Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 9 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- distance based phylogenetic placement☆27Updated last year
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- ☆14Updated 3 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆36Updated 2 weeks ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- A repository for generating strobemers and evalaution☆79Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year