Alternatives and similar repositories for pca

Users that are interested in pca are comparing it to the libraries listed below

• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 5 months ago
• nh13 / fqme
  ☆22Updated 6 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 9 months ago
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆21Updated last week
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆14Updated last month
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 6 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated last month
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• tanghaibao / rust-wfa2
  Rust binding for WFA2-lib
  ☆10Updated 3 years ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 2 weeks ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆20Updated this week
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 8 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated 2 months ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆26Updated 10 months ago
• pangenome / gfagino
  your friendly pangenome graph genotyper
  ☆10Updated 2 years ago
• Malfoy / BCOOL
  de Bruijn graph cOrrectiOn from graph aLignment
  ☆11Updated 4 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆12Updated 6 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆26Updated last year