Alternatives and similar repositories for pca

Users that are interested in pca are comparing it to the libraries listed below

• nh13 / fqme
  ☆22Updated 6 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 4 months ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 8 months ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆14Updated last month
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆18Updated 3 weeks ago
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 11 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆20Updated this week
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 7 months ago
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆17Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆17Updated last month
• 38 / grass
  ☆21Updated 2 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 6 months ago
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated last month
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆12Updated 6 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆29Updated 10 months ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 6 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 4 months ago
• tanghaibao / rust-wfa2
  Rust binding for WFA2-lib
  ☆10Updated 2 years ago
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆27Updated 9 months ago
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated 2 weeks ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 10 months ago
• brentp / hts-zig
  ziglang + htslib
  ☆20Updated 3 years ago
• natir / nuc2bit
  ☆14Updated 4 years ago