alshai / r-indexLinks
An optimal space run-length Burrows-Wheeler transform full-text index
☆27Updated 4 years ago
Alternatives and similar repositories for r-index
Users that are interested in r-index are comparing it to the libraries listed below
Sorting:
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆28Updated 7 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 9 months ago
- ☆24Updated 2 months ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 7 months ago
- A long read simulator based on badread idea☆22Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- Benchmarking pairwise aligners☆36Updated 9 months ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆23Updated last week
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Align subreads to ccs reads☆14Updated 5 months ago
- ☆14Updated 2 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago