alshai / r-indexLinks
An optimal space run-length Burrows-Wheeler transform full-text index
☆27Updated 3 years ago
Alternatives and similar repositories for r-index
Users that are interested in r-index are comparing it to the libraries listed below
Sorting:
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Benchmarking pairwise aligners☆36Updated 6 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 6 months ago
- A long read simulator based on badread idea☆23Updated 2 years ago
- ☆28Updated 4 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Graph based multi genome aligner☆47Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- ☆17Updated 2 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- ☆17Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Filter of Pairwise Alignement☆45Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- ☆14Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated 2 weeks ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago