An optimal space run-length Burrows-Wheeler transform full-text index
☆27Oct 28, 2021Updated 4 years ago
Alternatives and similar repositories for r-index
Users that are interested in r-index are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- ☆21Dec 26, 2025Updated 7 months ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆34Sep 6, 2023Updated 2 years ago
- ☆15May 22, 2026Updated 2 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- ☆18Jul 9, 2018Updated 8 years ago
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 3 weeks ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple succinct data structures (in Rust)☆55Apr 18, 2026Updated 3 months ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- ☆26Jul 1, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆57Aug 11, 2022Updated 3 years ago
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Pan-Genomic Matching Statistics☆58Apr 3, 2024Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆35Dec 9, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- ☆17Dec 7, 2022Updated 3 years ago
- Self-contained, multi-threaded fasta/q parser☆50Mar 10, 2026Updated 4 months ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- Sketch-based surveillance platform☆14Updated this week
- ☆16Jan 10, 2022Updated 4 years ago