alshai / r-indexLinks
An optimal space run-length Burrows-Wheeler transform full-text index
☆27Updated 4 years ago
Alternatives and similar repositories for r-index
Users that are interested in r-index are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆28Updated 9 months ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Updated 9 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- ☆24Updated 5 months ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Benchmarking pairwise aligners☆36Updated 11 months ago
- Graph based multi genome aligner☆49Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated 3 weeks ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 months ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- A long read simulator based on badread idea☆22Updated 3 years ago
- ☆14Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago