38 / grassLinks
☆22Updated 3 years ago
Alternatives and similar repositories for grass
Users that are interested in grass are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Alignment-based gene expression quantification☆29Updated 2 months ago
- Rust library for processing sequencing reads.☆25Updated last year
- Rust in bioinformatics and computational biology☆19Updated 3 years ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated 6 months ago
- Fast sequence distance estimates☆19Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ntHash implementation in Rust☆36Updated last year
- Command line tools for IntSpan related bioinformatics operations☆12Updated 7 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated last month
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 5 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- GFA parser in Rust☆30Updated 2 years ago
- drunk on perbase pileups and lua expressions☆19Updated 6 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated last year
- PCA in rust☆15Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆37Updated last month
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- GBWT in Rust☆43Updated 7 months ago
- ☆21Updated 11 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆13Updated 2 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 11 months ago