38 / grass
☆21Updated 2 years ago
Alternatives and similar repositories for grass:
Users that are interested in grass are comparing it to the libraries listed below
- Alignment-based gene expression quantification☆27Updated this week
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 7 months ago
- Command line tools for IntSpan related bioinformatics operations☆13Updated last month
- drunk on perbase pileups and lua expressions☆17Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 7 months ago
- Iterate over minimizers of a DNA sequence☆27Updated 7 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- Shared k-mer content between two genomes☆17Updated last year
- Rust in bioinformatics and computational biology☆20Updated 2 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆13Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 3 years ago
- Rust library for processing sequencing reads.☆21Updated 5 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆17Updated this week
- Rust package for constructing and analyzing phylogenies.☆15Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆14Updated 3 months ago
- GFA parser in Rust☆30Updated last year
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- ☆27Updated 10 months ago
- Rust bindings to minimap2 library☆87Updated last month
- ☆17Updated 3 weeks ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Updated 11 months ago
- GBWT in Rust☆42Updated 2 months ago
- ☆22Updated 2 months ago
- PCA in rust☆14Updated last year