☆17Jun 21, 2022Updated 4 years ago
Alternatives and similar repositories for LtrDetector
Users that are interested in LtrDetector are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A parallel wrapper for LTR_FINDER☆57Mar 8, 2026Updated 7 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Jan 16, 2024Updated 2 years ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Jun 30, 2026Updated 4 months ago
- ☆11Oct 7, 2026Updated 3 weeks ago
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- tandem repeat finding from erroneous long reads☆15Jun 30, 2026Updated 4 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 11 months ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆20Apr 24, 2022Updated 4 years ago
- ☆40Jun 19, 2023Updated 3 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Synteny matrix representation with maximum likelihood pipeline☆17Jul 7, 2021Updated 5 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆53Sep 24, 2026Updated last month
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- R package to explore active transposable elements with RNA-seq data☆20Nov 25, 2022Updated 3 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 6 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Reference-free profiling of polyploid genomes☆149Oct 2, 2025Updated last year
- Code repository for the T2T-Y paper☆25Jul 11, 2023Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆87Jan 6, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…