BioinformaticsToolsmith / LtrDetectorLinks
☆18Updated 2 years ago
Alternatives and similar repositories for LtrDetector
Users that are interested in LtrDetector are comparing it to the libraries listed below
Sorting:
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- ☆29Updated 5 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Genome Annotation Pipeline☆35Updated 9 months ago
- test repository☆29Updated last year
- ☆27Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 11 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆20Updated 9 months ago
- ☆28Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 5 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- Draw a dot plot from a paf alignment☆29Updated last month
- ☆24Updated last year
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 6 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 4 years ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- ☆16Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago