BioinformaticsToolsmith / LtrDetectorLinks
☆18Updated 3 years ago
Alternatives and similar repositories for LtrDetector
Users that are interested in LtrDetector are comparing it to the libraries listed below
Sorting:
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- A tool for evaluating long-read de novo assembly results☆39Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 3 months ago
- Genome Annotation Pipeline☆36Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- use long sequenced reads to close gaps in assemblies☆38Updated 6 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- ☆41Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆32Updated 7 months ago
- ☆21Updated last year
- ☆37Updated last month
- An efficient assembly tool for plant mitochondrial genome☆63Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- ☆30Updated 7 months ago
- ☆29Updated last year
- ☆28Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A program for assessing the T2T genome continuity☆83Updated last week
- ☆77Updated 5 years ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆33Updated last month
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆39Updated last week