Alternatives and similar repositories for MTEC:

Users that are interested in MTEC are comparing it to the libraries listed below

• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• GoreLab / Sorghum-HapMap
  Hapmap-v1
  ☆11Updated 5 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• vgteam / giraffe-sv-paper
  ☆42Updated 11 months ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 4 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• jdaron / CLARI-TE
  ☆10Updated 10 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆26Updated 3 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 2 years ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• liu3zhenlab / homotools
  ☆27Updated 3 months ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆11Updated 10 years ago
• schatzlab / Col-CEN
  Resources for the Col-CEN reference genome assemblies
  ☆11Updated 3 years ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year