Alternatives and similar repositories for sigalign:

Users that are interested in sigalign are comparing it to the libraries listed below

• broadinstitute / GATK-for-Microbes
  ☆25Updated 3 years ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆55Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated last month
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆33Updated 7 months ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated 3 weeks ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 5 months ago
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆14Updated 2 weeks ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆22Updated last month
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• Psy-Fer / blue-crab
  crab go snap snap
  ☆37Updated last month
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆23Updated last year
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆29Updated 3 months ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated this week
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆21Updated last month
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆33Updated 3 weeks ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆17Updated 5 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 3 years ago
• wdecoster / kyber
  ☆21Updated 2 months ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆14Updated 3 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 5 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 3 months ago
• UofABioinformaticsHub / shinyNgsreports
  The shiny app that accompanies the ngsReports R package
  ☆14Updated 3 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last week
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 7 months ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 11 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆12Updated last year