baku4 / sigalign
A Similarity-Guided Alignment Algorithm
☆26Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for sigalign
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆54Updated last year
- a lexicographically-based GTF/GFF sorter☆28Updated 2 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- bedtools-like functionality for interval sets in rust☆44Updated 2 months ago
- implicit pangenome graph☆42Updated last week
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 4 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆17Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated 2 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆20Updated last year
- ☆40Updated this week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆25Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆38Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- ☆17Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated 3 weeks ago
- Creating alignment plots from bam files☆56Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆41Updated last month
- Automated Detection and Qualification of Differential Methylation☆11Updated 11 months ago
- Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all☆12Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last month
- Teaching modules for Human Genome Variation Lab.☆19Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated 3 weeks ago
- A library and tool for accessing remote BLOW5 files.☆24Updated last month
- Evolutionary Transcriptomics with R☆41Updated last week
- vembrane filters VCF records using python expressions☆57Updated last month
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago