baku4 / sigalignLinks
A Similarity-Guided Alignment Algorithm
☆27Updated 6 months ago
Alternatives and similar repositories for sigalign
Users that are interested in sigalign are comparing it to the libraries listed below
Sorting:
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- gia: Genomic Interval Arithmetic☆63Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 9 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 6 months ago
- Python bindings for the TaxonKit library☆41Updated last week
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 3 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 3 months ago
- Scoring GT/AG sites for improving spliced alignment☆46Updated last month
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- A versatile toolkit for k-mers with taxonomic information☆81Updated 3 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28Updated 7 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- An efficient CLI to extract sequences from the SRA☆118Updated 3 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆55Updated 4 months ago
- ☆31Updated 4 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 6 months ago
- Nail is an Alignment Inference tooL☆54Updated this week
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆13Updated 8 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 3 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago