baku4 / sigalignLinks
A Similarity-Guided Alignment Algorithm
☆27Updated 2 months ago
Alternatives and similar repositories for sigalign
Users that are interested in sigalign are comparing it to the libraries listed below
Sorting:
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- gia: Genomic Interval Arithmetic☆65Updated 11 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 5 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 5 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆52Updated 2 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated this week
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆19Updated 5 months ago
- a lexicographically-based GTF/GFF sorter☆36Updated 3 months ago
- A library and tool for accessing remote BLOW5 files.☆24Updated 10 months ago
- Scoring GT/AG sites for improving spliced alignment☆45Updated 3 weeks ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Python bindings for the TaxonKit library☆41Updated last month
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 2 months ago
- ☆31Updated 3 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated 11 months ago
- Nail is an Alignment Inference tooL☆51Updated this week
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆23Updated last month
- ☆28Updated 3 years ago
- An efficient CLI to extract sequences from the SRA☆111Updated 2 weeks ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year