Alternatives and similar repositories for mapAD

Users that are interested in mapAD are comparing it to the libraries listed below

• bcgsc / LINKS
  ⛓ Long Interval Nucleotide K-mer Scaffolder
  ☆74Updated 3 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated last year
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• twolinin / longphase
  ☆114Updated 2 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 3 months ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆34Updated 9 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆58Updated 2 weeks ago
• GATB / MindTheGap
  MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …
  ☆37Updated 3 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆82Updated 2 weeks ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆64Updated last week
• GATB / gatb-minia-pipeline
  GATB Minia assembly pipeline
  ☆30Updated 2 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 3 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• bioinfologics / w2rap-contigger
  An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
  ☆45Updated 2 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated 8 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆43Updated last year
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆67Updated 3 years ago
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆74Updated 4 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆107Updated last month
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆67Updated last week
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 3 months ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆80Updated 7 months ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 6 years ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆92Updated 4 years ago