Alternatives and similar repositories for mapAD

Users that are interested in mapAD are comparing it to the libraries listed below

• ekg / seqwish
  alignment to variation graph inducer
  ☆150Updated 2 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated 4 months ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆76Updated 9 years ago
• bcgsc / LINKS
  ⛓ Long Interval Nucleotide K-mer Scaffolder
  ☆75Updated 5 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆128Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 4 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 3 months ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆67Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 4 months ago
• daewoooo / SVbyEye
  ☆137Updated 4 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 3 weeks ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆109Updated 3 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆107Updated 3 years ago
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆67Updated 4 years ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆119Updated last year
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆86Updated 7 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆186Updated last month
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆74Updated 6 months ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated last year
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆70Updated last year
• darwintreeoflife / darwintreeoflife.data
  Interim data for the Darwin Tree of Life Project
  ☆33Updated 5 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆44Updated 2 weeks ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆60Updated 7 years ago