mpieva / mapAD
An aDNA aware short-read mapper
☆19Updated last week
Related projects ⓘ
Alternatives and complementary repositories for mapAD
- Detecting multi-genome synteny using minimizer graph mapping☆71Updated 3 weeks ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆10Updated last year
- Annotation helper tool for the manual curation of transposable element consensus sequences☆45Updated 5 months ago
- GATB Minia assembly pipeline☆29Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆68Updated 3 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆85Updated 3 weeks ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated 3 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Creating alignment plots from bam files☆56Updated this week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Show pangenome graphs in an easy way☆53Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Genome Annotation Without Nightmares☆43Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆48Updated 2 months ago
- ☆24Updated this week
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- ☆53Updated last year
- Genome Pair Rapid Dotter☆61Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆34Updated 6 months ago
- ☆18Updated this week
- ☆79Updated 6 months ago