jguhlin / sfastaLinks
sfasta
☆35Updated 8 months ago
Alternatives and similar repositories for sfasta
Users that are interested in sfasta are comparing it to the libraries listed below
Sorting:
- gia: Genomic Interval Arithmetic☆66Updated last year
- Generate random test data for bioinformatics☆27Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Read contamination removal☆25Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- expressions on VCFs☆89Updated 9 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Updated last month
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆57Updated 2 months ago
- bioinformatics toolkit in rust☆93Updated 4 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Implementation of ToL genome assembly workflows☆24Updated 2 weeks ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 7 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last week
- lossless nanopore pod5 <=> s/blow5 file conversion☆45Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Nail is an Alignment Inference tooL☆55Updated 2 weeks ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- A long read simulator based on badread idea☆22Updated 3 years ago
- Creating alignment plots from bam files☆104Updated last week