Alternatives and similar repositories for sfasta

Users that are interested in sfasta are comparing it to the libraries listed below

• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated last month
• hcdenbakker / sepia
  taxonomic classifier based on the kraken2 algorithms and more
  ☆45Updated 4 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated last month
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆29Updated last year
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆52Updated last week
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 4 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 4 months ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• mbhall88 / drprg
  Drug Resistance Prediction with Reference Graphs
  ☆21Updated this week
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 9 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆86Updated 6 months ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆40Updated 2 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• cschin / peregrine-2021
  ☆58Updated last year
• Baohua-Chen / GFFx
  A Rust-Based suite of utilities for ultra-fast genomic feature extraction
  ☆24Updated 3 weeks ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• sanger-pathogens / pymummer
  Python3 module for running MUMmer and reading the output
  ☆33Updated 7 months ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆25Updated last week
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated last week
• broadinstitute / pyfrost
  Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API
  ☆27Updated 2 years ago
• pierrepeterlongo / back_to_sequences
  ☆45Updated last week