Daniel-Liu-c0deb0t / simple-sacaLinks
Hardware go brrr bounded context suffix array construction algorithm
☆19Updated 2 years ago
Alternatives and similar repositories for simple-saca
Users that are interested in simple-saca are comparing it to the libraries listed below
Sorting:
- Parallel Construction of Suffix Arrays in Rust☆26Updated 7 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Alignment-based gene expression quantification☆30Updated 3 months ago
- Rust library for processing sequencing reads.☆25Updated last year
- Simple succinct data structures (in Rust)☆51Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- ☆22Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆85Updated this week
- A SIMD-accelerated library to compute random minimizers☆33Updated 3 weeks ago
- ☆15Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- A Rust library for building modular, fast and compact indexes over genomic data☆12Updated 2 years ago
- ☆20Updated 5 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- ☆15Updated 2 weeks ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆41Updated 3 months ago
- A very fast interval tree data structure☆124Updated 10 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆38Updated 2 months ago
- Fast sequence distance estimates☆24Updated last week
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆137Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ntHash implementation in Rust☆36Updated last year
- A pairwise sequence aligner written in Rust☆142Updated last month
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15Updated 7 months ago
- Rust implmentation of VCF parser☆25Updated 3 years ago