Alternatives and similar repositories for slow5-rs:

Users that are interested in slow5-rs are comparing it to the libraries listed below

• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆47Updated 2 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 11 months ago
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆23Updated 2 weeks ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 7 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated last week
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆33Updated 3 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 8 months ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆44Updated 4 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 6 months ago
• pangenome / impg
  implicit pangenome graph
  ☆52Updated this week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆28Updated this week
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated 11 months ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆20Updated 2 years ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆24Updated 4 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated 3 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 7 months ago
• mbhall88 / drprg
  Drug Resistance Prediction with Reference Graphs
  ☆20Updated last year
• nanoporetech / pyspoa
  Python bindings to spoa
  ☆19Updated last year
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆19Updated 3 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 6 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 3 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 3 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆68Updated this week
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆32Updated 6 months ago