Alternatives and similar repositories for slow5-rs

Users that are interested in slow5-rs are comparing it to the libraries listed below

• ostnam / rust-wfa
  ☆11Updated 3 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆54Updated last month
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 6 months ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated last week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated last week
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated 2 years ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated 3 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated 4 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 5 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆36Updated last month
• nanoporetech / pomfret
  ☆20Updated last month
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated 11 months ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 2 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆71Updated last year
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated last month
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• HudsonAlpha / fmlrc2
  ☆47Updated 2 years ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 4 months ago
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆52Updated this week
• bede / deacon
  FASTX search and [host] depletion using minimizers
  ☆80Updated last week