bsaintjo / slow5-rsLinks
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
☆10Updated 10 months ago
Alternatives and similar repositories for slow5-rs
Users that are interested in slow5-rs are comparing it to the libraries listed below
Sorting:
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Fast and exact gap-affine partial order alignment☆54Updated last week
- ☆11Updated 3 years ago
- Benchmarking pairwise aligners☆36Updated 7 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Command line utility for working with next-generation sequencing files.☆36Updated 2 months ago
- Rust bindings to minimap2 library☆101Updated last week
- ntHash implementation in Rust☆36Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- an API for intersections of genomic data☆75Updated this week
- Compacted and colored de Bruijn graph construction and querying☆84Updated 2 weeks ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated last year
- Optimal sequence-to-graph alignment with recombinations☆36Updated last month
- bioinformatics toolkit in rust☆90Updated 3 months ago
- A SIMD-accelerated library to compute random minimizers☆33Updated last week
- gia: Genomic Interval Arithmetic☆65Updated last year
- implicit pangenome graph☆69Updated last week
- Generate random test data for bioinformatics☆26Updated last year
- Creating alignment plots from bam files☆65Updated this week
- Alignment-based gene expression quantification☆28Updated 3 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 5 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last month
- ☆20Updated 2 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 11 months ago
- ☆15Updated last year
- expressions on VCFs☆85Updated 4 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 4 months ago
- Drug Resistance Prediction with Reference Graphs☆21Updated 2 years ago
- FASTX search and [host] depletion using minimizers☆83Updated last week