Alternatives and similar repositories for slow5-rs

Users that are interested in slow5-rs are comparing it to the libraries listed below

• ostnam / rust-wfa
  ☆12Updated 3 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆55Updated 2 weeks ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆92Updated last month
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated last week
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 8 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 4 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆86Updated 6 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 7 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated this week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆55Updated 3 weeks ago
• pangenome / impg
  implicit pangenome graph
  ☆77Updated this week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆38Updated 3 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆80Updated this week
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 2 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated 2 years ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆52Updated 2 weeks ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆26Updated 6 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 4 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 5 months ago