bsaintjo / slow5-rs
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
☆10Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for slow5-rs
- ☆11Updated 2 years ago
- Rust bindings to minimap2 library☆66Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆40Updated 2 weeks ago
- Command line utility for working with next-generation sequencing files.☆34Updated last week
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- Benchmarking pairwise aligners☆36Updated 7 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- Generate random test data for bioinformatics☆25Updated 5 months ago
- Creating alignment plots from bam files☆56Updated this week
- Strain resolver for metagenomics☆68Updated 3 months ago
- an API for intersections of genomic data☆74Updated this week
- ntHash implementation in Rust☆34Updated 4 months ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated this week
- bioinformatics toolkit in rust☆78Updated 6 months ago
- Nail is an Alignment Inference tooL☆41Updated this week
- Alignment-based gene expression quantification☆26Updated 5 months ago
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- Optimal sequence-to-graph alignment with recombinations☆24Updated last week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- Evaluating Nanopore-based bacterial variant calling☆15Updated last month
- implicit pangenome graph☆44Updated 2 weeks ago
- Split k-mer analysis – version 2☆70Updated 3 weeks ago
- Drug Resistance Prediction with Reference Graphs☆19Updated last year
- ☆18Updated this week
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- ☆15Updated 11 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year