Alternatives and similar repositories for slow5-rs

Users that are interested in slow5-rs are comparing it to the libraries listed below

• ostnam / rust-wfa
  ☆12Updated 3 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆30Updated 4 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆57Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆102Updated 2 weeks ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 6 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 10 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 3 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆80Updated 9 months ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆91Updated 3 weeks ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆39Updated 5 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆33Updated 2 years ago
• pangenome / impg
  implicit pangenome graph
  ☆86Updated 2 weeks ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆136Updated 2 weeks ago
• brentp / vcfexpress
  expressions on VCFs
  ☆88Updated 8 months ago
• nanoporetech / pomfret
  ☆26Updated last month
• COMBINE-lab / pufferfish2
  ☆15Updated 2 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆27Updated 8 months ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated last month
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆78Updated last week
• natir / biotest
  Generate random test data for bioinformatics
  ☆27Updated last year
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• Baohua-Chen / GFFx
  A Rust-Based suite of utilities for ultra-fast genomic feature extraction
  ☆40Updated last week
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆29Updated 5 months ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 6 months ago