NCBI-Hackathons / ATACFlowLinks
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
☆14Updated 6 years ago
Alternatives and similar repositories for ATACFlow
Users that are interested in ATACFlow are comparing it to the libraries listed below
Sorting:
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Updated 7 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆14Updated this week
- ☆18Updated 5 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 3 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19Updated 6 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆19Updated 3 months ago
- BED QC tool (in the making)☆16Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last week
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- interactive plots for differential expression analysis☆33Updated last month
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- A python package for showing JBrowse views☆26Updated last year
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Tools for handling HiC and 5C data☆24Updated last year
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- ☆13Updated 7 years ago
- FunctionaL Omics Processing platform☆13Updated last year
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Updated 6 years ago