nf-core / mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
☆33Updated 2 weeks ago
Alternatives and similar repositories for mhcquant:
Users that are interested in mhcquant are comparing it to the libraries listed below
- Absolute quantification package based on quantms.io☆13Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- R package for analysing proteomics data☆49Updated last year
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆17Updated last month
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 weeks ago
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- IPAW: a Nextflow workflow for proteogenomics☆25Updated 6 months ago
- ☆26Updated 3 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆36Updated this week
- Integration ribosome profiling - mass spectrometry☆14Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 9 months ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- Shiny app for making and annotating Volcano plots☆22Updated 5 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated this week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 6 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆19Updated 2 weeks ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated 8 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- ☆47Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated last year
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- ClinVar Mapping and Annotation Toolkit☆19Updated this week
- DRUGZ software☆23Updated 3 years ago
- MHC Class I and Class II neoantigen binding prediction☆28Updated last year
- BAGEL software☆27Updated last year
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆61Updated 4 months ago