Identify and quantify MHC eluted peptides from mass spectrometry raw data
☆44Feb 17, 2026Updated last week
Alternatives and similar repositories for mhcquant
Users that are interested in mhcquant are comparing it to the libraries listed below
Sorting:
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Feb 11, 2026Updated 2 weeks ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 2 weeks ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- ☆15May 30, 2025Updated 9 months ago
- Programing and Data Analysis for Modern Neuroscience - Spring 2020☆12Oct 19, 2020Updated 5 years ago
- Python client for PRIDE Archive Rest API.☆36Feb 6, 2026Updated 3 weeks ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated last week
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 4 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Oct 23, 2025Updated 4 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Feb 23, 2024Updated 2 years ago
- ☆11Nov 24, 2025Updated 3 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆143Nov 21, 2025Updated 3 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 4 months ago
- SQL support plugin for Nextflow☆32Sep 15, 2025Updated 5 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Collisional cross-section prediction for modified and multiconformational peptides☆13Feb 18, 2026Updated last week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆24Updated this week
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 6 months ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆28Oct 15, 2024Updated last year
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆51Updated this week
- Coprolite host Identification pipeline☆12Feb 18, 2026Updated last week
- ☆11Jan 15, 2020Updated 6 years ago
- Frankies Scalable, AI-Based Antibody Design Pipeline☆18Feb 20, 2026Updated last week
- Build contrasts for models defined with formulaic☆12Updated this week
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆12Jul 8, 2021Updated 4 years ago
- ☆12Jun 13, 2024Updated last year
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- ☆13Jan 7, 2026Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Nov 24, 2024Updated last year
- ☆33Oct 27, 2020Updated 5 years ago
- Python package for efficient mass spectrometry data processing and visualization☆164Dec 18, 2025Updated 2 months ago
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- ☆11Nov 15, 2023Updated 2 years ago