nf-core / mhcquantLinks
Identify and quantify MHC eluted peptides from mass spectrometry raw data
☆39Updated this week
Alternatives and similar repositories for mhcquant
Users that are interested in mhcquant are comparing it to the libraries listed below
Sorting:
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 6 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 9 months ago
- DRUGZ software☆24Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆36Updated last year
- A guide to running MaxQuant in Linux☆34Updated 5 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- Multi-Omics Peptide Generator☆28Updated 2 weeks ago
- Absolute quantification package based on quantms.io☆16Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆60Updated this week
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated last week
- Python client for PRIDE Archive Rest API.☆24Updated this week
- Integration ribosome profiling - mass spectrometry☆15Updated 2 weeks ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 9 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- ☆31Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆59Updated last week
- A collection of useful functions for bioinformatics data analysis☆25Updated 3 months ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 7 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- A library for QC report based on MultiQC framework☆22Updated this week
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆42Updated 2 weeks ago
- ☆35Updated 3 months ago