Alternatives and similar repositories for mhcquant:

Users that are interested in mhcquant are comparing it to the libraries listed below

• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆18Updated 3 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆13Updated 2 months ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆27Updated 8 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 4 months ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated 2 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆33Updated 11 months ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆32Updated 5 years ago
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆11Updated 11 months ago
• pFindStudio / pFind3
  ☆26Updated 2 months ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆22Updated 9 months ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆26Updated 3 months ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆21Updated 2 months ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆14Updated last month
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated last month
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆35Updated 3 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆49Updated 5 years ago
• yafeng / proteogenomics_python
  python scripts for proteogenomics analysis
  ☆10Updated 5 years ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated 10 months ago
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆23Updated 7 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated 2 weeks ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆42Updated this week
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆19Updated 5 years ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆28Updated last month
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆22Updated 2 weeks ago
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆23Updated 2 weeks ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆20Updated 2 years ago