nf-core / mhcquantLinks
Identify and quantify MHC eluted peptides from mass spectrometry raw data
☆38Updated this week
Alternatives and similar repositories for mhcquant
Users that are interested in mhcquant are comparing it to the libraries listed below
Sorting:
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 8 months ago
- Multi-Omics Peptide Generator☆27Updated 3 weeks ago
- A guide to running MaxQuant in Linux☆34Updated 5 years ago
- DRUGZ software☆23Updated 4 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- ☆11Updated 5 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆36Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Bayesian enrichment estimation in R☆11Updated 3 years ago
- Python package to analyze DNA methylation data☆43Updated 2 weeks ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 5 months ago
- Integration ribosome profiling - mass spectrometry☆15Updated this week
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Python package to annotate and visualize gene fusions.☆64Updated last year
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Updated 11 months ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- Making bioinformatics fun again☆74Updated 4 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated 3 weeks ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆32Updated 2 years ago
- ☆41Updated last week
- Absolute quantification package based on quantms.io☆16Updated last week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 3 weeks ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 2 weeks ago
- PRedictor of IMmunogenic Epitopes☆24Updated last week
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- ☆31Updated 4 years ago