nilesh-tawari / ChronQCLinks
Manuscript describing ChronQC is now available online in Bioinformatics
☆18Updated 6 years ago
Alternatives and similar repositories for ChronQC
Users that are interested in ChronQC are comparing it to the libraries listed below
Sorting:
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- sort genomic data☆36Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Fast sequencing data quality metrics☆27Updated last week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 months ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆36Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year