nilesh-tawari / ChronQCLinks
Manuscript describing ChronQC is now available online in Bioinformatics
☆18Updated 6 years ago
Alternatives and similar repositories for ChronQC
Users that are interested in ChronQC are comparing it to the libraries listed below
Sorting:
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- NGSTools☆16Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆44Updated 4 months ago