nilesh-tawari / ChronQC
Manuscript describing ChronQC is now available online in Bioinformatics
☆17Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for ChronQC
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆21Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 4 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- Human mitochondrial variants annotation using HmtVar.☆16Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆16Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- ☆23Updated 5 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 6 years ago
- Mapped QC analysis program☆42Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- ☆30Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 2 years ago