luslab / luslab-nf-modulesLinks
Luslab nextflow modules
☆14Updated 4 years ago
Alternatives and similar repositories for luslab-nf-modules
Users that are interested in luslab-nf-modules are comparing it to the libraries listed below
Sorting:
- Docker containers for bioinformatics with a small footprint☆23Updated last year
- Customer workshop materials☆18Updated 2 years ago
- Automatically source dotenv files into your Nextflow scope☆9Updated 3 months ago
- UMCU Genetics Nextflow modules☆28Updated 9 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 6 months ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆25Updated last year
- k-mer similarity analysis pipeline☆22Updated last month
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- Command line tool for Wave containers provisioning service☆15Updated 2 weeks ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated last month
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆24Updated last week
- Simulate mutations in genomes☆15Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- reference free variant assembly☆33Updated 2 years ago
- ☆19Updated 8 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆22Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago