Luslab nextflow modules
☆14Apr 30, 2021Updated 4 years ago
Alternatives and similar repositories for luslab-nf-modules
Users that are interested in luslab-nf-modules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Sep 28, 2018Updated 7 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- SQL support plugin for Nextflow☆32Sep 15, 2025Updated 6 months ago
- A best practices guide for Nextflow on Kubernetes☆21Nov 8, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22May 22, 2024Updated last year
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆70Feb 9, 2025Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Haplotype-aware assembly of complex regions and small genomes☆15Nov 21, 2025Updated 4 months ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 3 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- Tips for Nextflow and cheatsheet for channel operation☆79Aug 14, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Jan 20, 2022Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 4 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Sep 7, 2019Updated 6 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- Python Toolkit for using containerized programs in either Singularity or Docker☆29Mar 19, 2024Updated 2 years ago
- ☆15Jun 27, 2024Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- Command line tool for Wave containers provisioning service☆19Mar 11, 2026Updated 2 weeks ago
- Nextflow Workshop at Rocky Mountain Genomics HackCon 2018☆10Jun 19, 2018Updated 7 years ago
- WtP: Phage identification via nextflow and docker or singularity☆104Updated this week
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago