Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
☆21Jul 28, 2026Updated 2 months ago
Alternatives and similar repositories for diaproteomics
Users that are interested in diaproteomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆50Oct 8, 2026Updated last week
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆85Oct 9, 2026Updated last week
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Nextflow pipeline wrapper for executing Cell Ranger☆12Mar 8, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.☆16Oct 7, 2026Updated last week
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Oct 7, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated 3 months ago
- A pipeline to investigate horizontal gene transfer from NGS data☆27Oct 7, 2026Updated last week
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Oct 23, 2022Updated 3 years ago
- Pipeline for automatic processing and quality control of mass spectrometry data☆14Sep 25, 2026Updated 3 weeks ago
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- ImageJ convenience layer for N5☆21Sep 23, 2026Updated 3 weeks ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆56Updated this week
- a streamlining post Spectronaut™ DIA-MS data analysis R package☆15Jun 1, 2026Updated 4 months ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆17Aug 19, 2026Updated last month
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Oct 8, 2026Updated last week
- Multi-omics multi-layered network integration and interpretation☆15Oct 15, 2024Updated 2 years ago
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 3 years ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆17Aug 3, 2021Updated 5 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆23Oct 7, 2026Updated last week
- ☆15Jan 27, 2022Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆31Jul 3, 2025Updated last year
- ☆24Feb 26, 2023Updated 3 years ago
- quantms workflow for DIANN tool including DIA and DDA analysis☆19Oct 8, 2026Updated last week
- This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI…☆20Jul 3, 2024Updated 2 years ago
- k-mer similarity analysis pipeline☆24Oct 7, 2026Updated last week
- collBook: Refine biological field observations☆12Dec 8, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Spatial transcriptomics analyses and decoding in R☆27Jul 8, 2026Updated 3 months ago
- 🇪🇺 EU AI Act practical readiness toolkit: starter pack, vendor assessment pack, checklists, templates, risk screening, AI inventory, an…☆19Aug 1, 2026Updated 2 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 6 months ago
- Benchmarking uncertainty quantification methods on proteins.☆22Jan 28, 2025Updated last year
- ☆33Sep 24, 2026Updated 3 weeks ago