Alternatives and similar repositories for diaproteomics

Users that are interested in diaproteomics are comparing it to the libraries listed below

• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆37Updated 11 months ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated last month
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆42Updated last week
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆35Updated 5 years ago
• athchen / beer
  Bayesian enrichment estimation in R
  ☆11Updated last month
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated 2 years ago
• cnobles / iGUIDE
  Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…
  ☆22Updated 5 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 8 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 11 months ago
• TRON-Bioinformatics / splice2neo
  R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
  ☆14Updated last month
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 6 months ago
• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆34Updated last month
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆13Updated last year
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆29Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆71Updated 3 weeks ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆44Updated last month
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆27Updated 11 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 6 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆21Updated last month
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 5 years ago
• Kumquatum / GWENA
  Gene Co-expression Network analysis pipeline
  ☆25Updated 2 years ago