nf-core / diaproteomics
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
☆17Updated 2 months ago
Alternatives and similar repositories for diaproteomics:
Users that are interested in diaproteomics are comparing it to the libraries listed below
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- R package for analysing proteomics data☆49Updated last year
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- ☆30Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆16Updated 2 weeks ago
- PepQuery: a targeted peptide search engine☆10Updated 10 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 10 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 weeks ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆19Updated last month
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆11Updated last year
- ☆11Updated 5 years ago
- ☆15Updated 2 years ago
- ☆26Updated last month
- Integration ribosome profiling - mass spectrometry☆14Updated 2 weeks ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 2 weeks ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆22Updated 5 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41Updated last week
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 3 months ago
- supplementary tables and files☆10Updated last year
- Proteomics Toolset for Integrative Data Analysis☆22Updated last year
- Proteomics label-free quantification (LFQ) analysis pipeline☆33Updated 2 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆35Updated 3 weeks ago
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- Python package to annotate and visualize gene fusions.☆61Updated 5 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- ☆38Updated 2 weeks ago