nf-core / diaproteomics
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
☆13Updated 4 months ago
Related projects: ⓘ
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆16Updated 3 months ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆20Updated 4 years ago
- PepQuery: a targeted peptide search engine☆9Updated 4 months ago
- R package for analysing proteomics data☆47Updated last year
- A guide to running MaxQuant in Linux☆30Updated 4 years ago
- Integration ribosome profiling - mass spectrometry☆14Updated this week
- Junction centric alternative splicing translator☆19Updated last year
- An S3 data object and framework for common quantitative proteomic analyses☆30Updated last month
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆11Updated 5 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated last month
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆32Updated 3 months ago
- ☆23Updated 5 years ago
- Proteomics Toolset for Integrative Data Analysis☆22Updated last year
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Updated 9 months ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆33Updated 4 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆19Updated 4 months ago
- ☆29Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆23Updated 6 months ago
- Create QC and summary reports for Alevin output☆30Updated 2 months ago
- ☆16Updated 4 years ago
- ☆14Updated 2 years ago
- ☆14Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆27Updated 9 years ago
- ☆15Updated last year
- iread☆23Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆19Updated last year