nf-core / diaproteomicsLinks
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
☆19Updated 5 months ago
Alternatives and similar repositories for diaproteomics
Users that are interested in diaproteomics are comparing it to the libraries listed below
Sorting:
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- ☆31Updated 4 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- ☆27Updated 5 months ago
- PepQuery: a targeted peptide search engine☆12Updated last year
- Integration ribosome profiling - mass spectrometry☆15Updated 3 months ago
- Absolute quantification package based on quantms.io☆14Updated last month
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆24Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last year
- IPAW: a Nextflow workflow for proteogenomics☆28Updated 10 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated this week
- Proteomics label-free quantification (LFQ) analysis pipeline☆36Updated 5 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆20Updated last year
- ☆11Updated 5 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 6 years ago
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆21Updated 3 weeks ago
- ☆15Updated 2 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆42Updated 2 weeks ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated 3 weeks ago
- The repo for LFQ-Analyst☆30Updated 10 months ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated 3 weeks ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Proteomics Toolset for Integrative Data Analysis☆23Updated 2 months ago
- Snakemake wrappers for bioinformatics.☆18Updated 2 years ago