dpryan79 / MethylDackelLinks
A (mostly) universal methylation extractor for BS-seq experiments.
☆172Updated last year
Alternatives and similar repositories for MethylDackel
Users that are interested in MethylDackel are comparing it to the libraries listed below
Sorting:
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated last month
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆101Updated 2 months ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated 2 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆135Updated 3 weeks ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆167Updated 3 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆149Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆132Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆139Updated 2 weeks ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- ☆151Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 7 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- Relevant papers for CNV and SV approaches☆93Updated 10 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last week