A (mostly) universal methylation extractor for BS-seq experiments.
☆181Oct 20, 2026Updated last week
Alternatives and similar repositories for MethylDackel
Users that are interested in MethylDackel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆161Sep 9, 2026Updated last month
- BISulfite-seq CUI Toolkit☆70Jul 18, 2026Updated 3 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆470Updated this week
- ☆42Apr 15, 2021Updated 5 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆199Apr 19, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BISulfite-seq CUI Toolkit☆29Oct 5, 2026Updated 3 weeks ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 4 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 7 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆90May 23, 2026Updated 5 months ago
- R package for DNA methylation analysis☆267Jul 15, 2026Updated 3 months ago
- R package for DNA methylation analysis☆21Oct 2, 2026Updated last month
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- Devel repository for bsseq☆38Aug 20, 2026Updated 2 months ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools to process and analyze deep sequencing data.☆772Updated this week
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Jan 28, 2022Updated 4 years ago
- Unofficial repo for software vendoring or packaging purposes☆22Oct 23, 2017Updated 9 years ago
- DMR Identification Tool☆35Jul 6, 2023Updated 3 years ago
- Detecting sites of genomic enrichment☆205Sep 20, 2026Updated last month
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆56Updated this week
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆24Apr 24, 2017Updated 9 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆100Oct 23, 2025Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆296Aug 10, 2026Updated 2 months ago
- ☆60Mar 9, 2022Updated 4 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆271May 5, 2023Updated 3 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆243Aug 11, 2021Updated 5 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 8 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A C library for handling bigWig files☆83Oct 11, 2026Updated 3 weeks ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Application for making ENCODE Blacklists☆350Apr 23, 2021Updated 5 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆67May 9, 2025Updated last year
- Fast alignment and preprocessing of chromatin profiles☆230Mar 20, 2026Updated 7 months ago
- ☆15Jun 27, 2025Updated last year
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 9 months ago