nf-core / smrnaseqLinks
A small-RNA sequencing analysis pipeline
☆94Updated 4 months ago
Alternatives and similar repositories for smrnaseq
Users that are interested in smrnaseq are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆83Updated last week
- RNA-Seq analysis workflow☆105Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 2 weeks ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆141Updated 2 months ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 3 months ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 2 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last week
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆94Updated 5 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- ☆104Updated last week
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Learning the Variant Call Format☆144Updated 2 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆51Updated 2 years ago
- ☆50Updated 4 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆89Updated this week
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆88Updated 4 months ago
- HiC uniform processing pipeline☆61Updated last year
- ☆59Updated 3 months ago