nf-core / smrnaseq
A small-RNA sequencing analysis pipeline
☆77Updated this week
Alternatives and similar repositories for smrnaseq:
Users that are interested in smrnaseq are comparing it to the libraries listed below
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆72Updated this week
- FEELnc : FlExible Extraction of LncRNA☆84Updated 4 months ago
- RNA-Seq analysis workflow☆103Updated 3 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated last year
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 4 months ago
- ☆83Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 6 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆42Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆132Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆107Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆138Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆81Updated this week
- Discovering known and novel miRNAs from small RNA sequencing data☆141Updated 5 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 3 months ago
- ☆110Updated last month
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- Script to automatically create and run IGV snapshot batchscripts☆139Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆113Updated 2 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆98Updated 9 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 3 months ago
- ☆36Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago