nf-core / smrnaseqLinks
A small-RNA sequencing analysis pipeline
☆98Updated this week
Alternatives and similar repositories for smrnaseq
Users that are interested in smrnaseq are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆85Updated this week
- RNA-Seq analysis workflow☆105Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 4 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 4 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆156Updated last year
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last week
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆95Updated last month
- ☆60Updated 4 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated 2 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆134Updated last year
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last week
- Relevant papers for CNV and SV approaches☆94Updated last year
- Publication quality NGS track plotting☆117Updated 2 months ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- ☆108Updated 2 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago