A small-RNA sequencing analysis pipeline
☆98Jan 7, 2026Updated 2 months ago
Alternatives and similar repositories for smrnaseq
Users that are interested in smrnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆91Mar 20, 2026Updated last week
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 4 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆221Nov 20, 2025Updated 4 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 9 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Nov 20, 2025Updated 4 months ago
- Simple bacterial assembly and annotation pipeline☆85Mar 16, 2026Updated last week
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,235Updated this week
- gatk4 RNA variant calling pipeline☆59Mar 9, 2026Updated 2 weeks ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 4 months ago
- Compare the quality of multiple genomes, along with their annotations.☆20Mar 20, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆189Feb 8, 2026Updated last month
- Comprehensive analysis of small RNA sequencing data☆35May 14, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆220Mar 19, 2026Updated last week
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆234Updated this week
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Apr 5, 2023Updated 2 years ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆319Updated this week
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆57Mar 6, 2026Updated 3 weeks ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- small rna-seq analysis package☆30Nov 7, 2022Updated 3 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆26Mar 16, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆75Mar 18, 2026Updated last week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 9 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Jun 3, 2025Updated 9 months ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Mar 19, 2026Updated last week
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆33Feb 15, 2022Updated 4 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆172Mar 18, 2026Updated last week
- Demultiplexing pipeline for sequencing data☆54Mar 18, 2026Updated last week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆188Mar 19, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated 11 months ago
- ☆12Jun 12, 2023Updated 2 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆24Updated this week
- ☆11Dec 15, 2025Updated 3 months ago
- Testing building mulled containers for multi-requirement tools.☆84Updated this week
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- Test data for MultiQC.☆24Mar 20, 2026Updated last week