nf-core / deepvariantLinks
Please consider using/contributing to https://github.com/nf-core/sarek
☆40Updated 3 years ago
Alternatives and similar repositories for deepvariant
Users that are interested in deepvariant are comparing it to the libraries listed below
Sorting:
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆20Updated last week
- Personal diploid genome creation and coordinate conversion☆26Updated 2 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- ☆51Updated 5 years ago
- Evolutionary Transcriptomics with R☆43Updated last week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago