nf-core / deepvariant
Please consider using/contributing to https://github.com/nf-core/sarek
☆40Updated 3 years ago
Alternatives and similar repositories for deepvariant:
Users that are interested in deepvariant are comparing it to the libraries listed below
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆51Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- Structural variant caller☆54Updated 3 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆33Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- Personal diploid genome creation and coordinate conversion☆24Updated this week
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago