nf-core / deepvariant
Please consider using/contributing to https://github.com/nf-core/sarek
☆40Updated 3 years ago
Alternatives and similar repositories for deepvariant
Users that are interested in deepvariant are comparing it to the libraries listed below
Sorting:
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated last week
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- ☆51Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆23Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Structural variant caller☆54Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- TIDDIT - structural variant calling☆73Updated last month
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago