Please consider using/contributing to https://github.com/nf-core/sarek
☆41Jul 13, 2021Updated 4 years ago
Alternatives and similar repositories for deepvariant
Users that are interested in deepvariant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆34Aug 18, 2025Updated 10 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Nascent Transcription Processing Pipeline☆23Updated this week
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Jun 17, 2026Updated 2 weeks ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆249Aug 10, 2025Updated 10 months ago
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆52May 26, 2025Updated last year
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- A GitHub action to install Nextflow☆29Updated this week
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- ☆11Dec 12, 2014Updated 11 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- ☆14May 12, 2023Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 22, 2026Updated last week
- ☆29Feb 17, 2021Updated 5 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- ☆13Feb 16, 2019Updated 7 years ago
- Customer workshop materials☆19May 13, 2026Updated last month
- nf-test utility functions☆12May 22, 2026Updated last month
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆121May 29, 2026Updated last month
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Mar 20, 2026Updated 3 months ago