nf-core / deepvariant
Please consider using/contributing to https://github.com/nf-core/sarek
☆40Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for deepvariant
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last month
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated 2 weeks ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Genomic data interpretation and visualization Workshop☆18Updated last year
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 5 years ago
- Master of Pores 2☆23Updated last year
- Adapters for trimming☆30Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆33Updated 6 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago
- for visual evaluation of read support for structural variation☆49Updated 5 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 3 months ago
- R package for inferring copy number from read depth☆31Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- ☆23Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- ☆39Updated 2 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Variant catalogue pipeline☆25Updated 3 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆36Updated last month