ATAC-seq peak-calling and QC analysis pipeline
☆227Jun 22, 2026Updated last week
Alternatives and similar repositories for atacseq
Users that are interested in atacseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆241Jun 22, 2026Updated last week
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆112May 14, 2026Updated last month
- Analysis of Chromosome Conformation Capture data (Hi-C)☆110May 6, 2026Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,322Jun 22, 2026Updated last week
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆336Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ENCODE ATAC-seq pipeline☆453Jul 18, 2024Updated last year
- Nascent Transcription Processing Pipeline☆23Jun 25, 2026Updated last week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆193Jun 3, 2026Updated 3 weeks ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Apr 30, 2026Updated 2 months ago
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 4 months ago
- ☆145Jan 7, 2019Updated 7 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 22, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆196May 29, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Converts bam or cram files to fastq format and does quality control.☆32Jun 17, 2026Updated 2 weeks ago
- A small-RNA sequencing analysis pipeline☆100Jun 3, 2026Updated 3 weeks ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆578Updated this week
- MACS -- Model-based Analysis of ChIP-Seq☆776Jun 17, 2026Updated 2 weeks ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Apr 30, 2026Updated 2 months ago
- ☆17Jan 3, 2019Updated 7 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆249Jun 9, 2026Updated 3 weeks ago
- Python package with helper tools for the nf-core community.☆314Updated this week
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Precision HLA typing from next-generation sequencing data☆81Jun 18, 2026Updated 2 weeks ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- nucleosome calling using ATAC-seq☆112Dec 20, 2020Updated 5 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,465Jun 20, 2026Updated last week
- R toolkit for the analysis of single-cell chromatin data☆420Jun 20, 2026Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆227Apr 30, 2026Updated 2 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆76Aug 3, 2023Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- chromatin Variability Across Regions (of the genome!)☆191May 1, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Simple bacterial assembly and annotation pipeline☆89Jun 11, 2026Updated 3 weeks ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 3 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago