nf-core / atacseqLinks
ATAC-seq peak-calling and QC analysis pipeline
☆210Updated 2 months ago
Alternatives and similar repositories for atacseq
Users that are interested in atacseq are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆321Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated 3 weeks ago
- ☆139Updated 6 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆225Updated 2 weeks ago
- ☆275Updated 10 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆263Updated 2 weeks ago
- Detecting sites of genomic enrichment☆194Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- ASCAT R package☆189Updated 2 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆239Updated last week
- ENCODE ChIP-seq pipeline☆272Updated last year
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆176Updated this week
- ☆95Updated this week
- Intro to ChIPseq using HPC☆313Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆255Updated 2 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆100Updated 2 weeks ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆112Updated 2 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆246Updated 2 weeks ago
- ☆155Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆346Updated 3 weeks ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- Fast alignment and preprocessing of chromatin profiles☆204Updated 2 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆171Updated 11 months ago