ATAC-seq peak-calling and QC analysis pipeline
☆226Aug 22, 2026Updated last week
Alternatives and similar repositories for atacseq
Users that are interested in atacseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆243Aug 21, 2026Updated last week
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆114Jul 27, 2026Updated last month
- Analysis of Chromosome Conformation Capture data (Hi-C)☆112Jul 27, 2026Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,359Updated this week
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆350Aug 5, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ENCODE ATAC-seq pipeline☆458Jul 18, 2024Updated 2 years ago
- Nascent Transcription Processing Pipeline☆25Jul 27, 2026Updated last month
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆197Aug 18, 2026Updated 2 weeks ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Aug 12, 2026Updated 2 weeks ago
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 6 months ago
- ☆147Jan 7, 2019Updated 7 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jul 24, 2026Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆200Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Converts bam or cram files to fastq format and does quality control.☆32Aug 19, 2026Updated last week
- A small-RNA sequencing analysis pipeline☆101Jul 27, 2026Updated last month
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆595Updated this week
- An analysis pipeline for Nanostring nCounter expression data.☆18Jul 28, 2026Updated last month
- MACS -- Model-based Analysis of ChIP-Seq☆784Jul 7, 2026Updated last month
- ☆17Jan 3, 2019Updated 7 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆254Aug 3, 2026Updated 3 weeks ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- Python package with helper tools for the nf-core community.☆319Aug 25, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Precision HLA typing from next-generation sequencing data☆81Aug 20, 2026Updated last week
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- nucleosome calling using ATAC-seq☆113Dec 20, 2020Updated 5 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,489Updated this week
- R toolkit for the analysis of single-cell chromatin data☆425Aug 21, 2026Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆228Aug 19, 2026Updated last week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- chromatin Variability Across Regions (of the genome!)☆193May 1, 2026Updated 4 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆76Aug 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 4 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- Simple bacterial assembly and annotation pipeline☆93Jul 29, 2026Updated last month
- Detecting sites of genomic enrichment☆203May 8, 2023Updated 3 years ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jul 21, 2026Updated last month
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated last month