nf-core / atacseqLinks
ATAC-seq peak-calling and QC analysis pipeline
☆201Updated 3 weeks ago
Alternatives and similar repositories for atacseq
Users that are interested in atacseq are comparing it to the libraries listed below
Sorting:
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- Application for making ENCODE Blacklists☆308Updated 4 years ago
- ☆260Updated 6 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- ☆135Updated 6 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆215Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆251Updated 3 months ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆249Updated 5 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆224Updated this week
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- ☆151Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆406Updated last year
- ASCAT R package☆181Updated 2 months ago
- ☆92Updated 3 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- parallel fastq-dump wrapper☆295Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆167Updated last week
- Full-Length Alternative Isoform analysis of RNA☆228Updated this week
- ENCODE ChIP-seq pipeline☆267Updated last year
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆142Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆280Updated 10 months ago
- Generate IGV style locus tracks from bigWig files in R☆162Updated 7 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆156Updated 2 weeks ago
- Step-by-step analysis pipeline for RNA-seq data☆118Updated last year
- Intro to ChIPseq using HPC☆306Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago