An automated RNA-seq pipeline using Nextflow
☆37Dec 17, 2025Updated 9 months ago
Alternatives and similar repositories for grape-nf
Users that are interested in grape-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- Nextflow basic tutorial for newbie users☆34Jun 17, 2018Updated 8 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 4 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GATK4 Best Practice Nextflow Pipeline☆35Jan 18, 2018Updated 8 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- A tool for bigWig files.☆119May 23, 2018Updated 8 years ago
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Aug 20, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 8 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 7 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆21Aug 24, 2023Updated 3 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- ☆10Dec 11, 2024Updated last year
- ☆20Oct 5, 2022Updated 4 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Dec 14, 2022Updated 3 years ago
- A curated list of nextflow based pipelines☆635Jun 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scientific Compute Container Specification and Support Library☆12Jan 12, 2017Updated 9 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 7 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆21Feb 20, 2021Updated 5 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆143Jun 28, 2024Updated 2 years ago
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- ☆19Dec 15, 2023Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Jul 10, 2017Updated 9 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago